NCBI - National Center for Biotechnology Information/NLM/NIH

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159 repositories

ncbi-cxx-toolkit-public
Public
NCBI C++ Toolkit package sources
C++
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Other
•20•55•1•0•Updated Nov 17, 2024Nov 17, 2024
icn3d
Public
web-based protein structure viewer and analysis tool interactively or in batch mode
nodejs delphi webgl vr ar jupyter-notebook chemical protein snp nucleotide
JavaScript
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Other
•42•154•6•1•Updated Nov 16, 2024Nov 16, 2024
stxtyper
Public
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
bioinformatics genomics pathogen escherichia-coli bioinformatics-tool virulence-genes
C++
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Other
•1•9•0•0•Updated Nov 16, 2024Nov 16, 2024
tree-tool
Public
Incremental building of phylogenetic distance trees
bioinformatics evolution phylogenetic-trees data-analysis distance-measures bioinformatics-tool
HTML
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Other
•7•19•0•1•Updated Nov 15, 2024Nov 15, 2024
ncbi-vdb
Public
ncbi-vdb
C
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Other
•39•89•10•3•Updated Nov 15, 2024Nov 15, 2024
datasets
Public
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
ncbi genomics-data
Jupyter Notebook
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Other
•41•369•25•0•Updated Nov 15, 2024Nov 15, 2024
sra-tools
Public
SRA Tools
C
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Other
•247•1.1k•76•4•Updated Nov 14, 2024Nov 14, 2024
amr
Public
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
genomics pathogen antibiotic-resistance bioinformatics
C++
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Other
•39•274•12•0•Updated Nov 13, 2024Nov 13, 2024
pgap
Public
NCBI Prokaryotic Genome Annotation Pipeline
Common Workflow Language
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Other
•88•314•4•0•Updated Nov 13, 2024Nov 13, 2024
ncbi-cxx-toolkit-conan
Public
NCBI C++ Toolkit package recipe
Python
•8•5•0•0•Updated Nov 12, 2024Nov 12, 2024
egapx
Public
Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
Nextflow
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Other
•8•81•5•0•Updated Nov 7, 2024Nov 7, 2024
ncbi-logging
Public
Log monitoring and gathering infrastructure to feed analytics
C++
•8•5•0•1•Updated Nov 7, 2024Nov 7, 2024
cxx-toolkit
Public
HTML
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The Unlicense
•45•19•0•0•Updated Nov 6, 2024Nov 6, 2024
clinvar
Public
ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov' with any questions or comments.
HTML
•14•70•4•0•Updated Nov 6, 2024Nov 6, 2024
nongenomic-evolution-of-tumor-subclones
Public
Python
•1•2•0•0•Updated Nov 5, 2024Nov 5, 2024
SpaceProfiler
Public
Jupyter Notebook
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
ribovore
Public
Perl
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Other
•5•13•3•0•Updated Oct 24, 2024Oct 24, 2024
SKESA
Public
SKESA assembler
C++
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Other
•19•112•17•2•Updated Oct 11, 2024Oct 11, 2024
workshop-asm-ngs-2024
Public
Pre-conference workshop for ASM NGS 2024
1•5•0•0•Updated Oct 10, 2024Oct 10, 2024
ncbi_doc_template
Public
CSS
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The Unlicense
•5•3•0•0•Updated Oct 9, 2024Oct 9, 2024
rapt
Public
Read Assembly and Annotation Pipeline Tool
ngs genome-annotation pgap annotation-pipeline skesa
17•55•14•0•Updated Oct 3, 2024Oct 3, 2024
gtax
Public
Python
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Other
•4•5•2•0•Updated Oct 3, 2024Oct 3, 2024
AF2_benchmark
Public
Jupyter Notebook
•3•13•0•0•Updated Sep 20, 2024Sep 20, 2024
CF-random
Public
Python
•2•3•0•0•Updated Sep 17, 2024Sep 17, 2024
pubchem-align3d
Public
This is a generic C++ library that can be used to rapidly align two small molecules in 3D space, with shape - and optionally color - Tanimoto scoring. Included is a sample RDKit application whereby any two SDF-format chemicals are read in and aligned.
C++
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Other
•1•8•0•0•Updated Sep 16, 2024Sep 16, 2024
SuPER
Public
Python
•4•5•0•0•Updated Sep 9, 2024Sep 9, 2024
elastic-blast
Public
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective
bioinformatics blast ncbi
Python
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Other
•15•46•4•0•Updated Sep 1, 2024Sep 1, 2024
DbGaP-FHIR-API-Docs
Public
The documentation repository for the dbGaP FHIR API.
documentation fhir phenotypes
Jupyter Notebook
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Other
•3•8•5•0•Updated Aug 28, 2024Aug 28, 2024
vadr
Public
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation
Perl
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Other
•23•99•7•0•Updated Aug 19, 2024Aug 19, 2024
elastic-blast-docs
Public
ElasticBLAST documentation
Other
•5•4•0•0•Updated Aug 5, 2024Aug 5, 2024