ENH: Add option to disable MathJax (#19824). #19856

davidchall · 2018-02-23T05:35:34Z

This prevents MathJax from processing table contents:

I'm hoping for a code review, to find out if this might be accepted. If so, I'll add the tests/docs.

closes Provide styling option to escape dollar signs #19824
tests added / passed
passes git diff upstream/master -u -- "*.py" | flake8 --diff
whatsnew entry

This prevents MathJax from processing table contents.

gfyoung · 2018-02-23T09:04:39Z

@davidchall : Thanks for the PR! For future reference, you should probably wait for us to weigh in on your filed issue before opening a PR. That's where we would "accept" the idea or not.

Once it's at the PR stage, we will not accept the changes until you add the documentation and tests.

davidchall · 2018-02-23T17:36:08Z

@gfyoung I apologize, and will keep the discussion over on the issue.

gfyoung · 2018-02-23T17:40:51Z

I apologize, and will keep the discussion over on the issue.

No worries! You're new to the process, so I wouldn't have expected you to be familiar with that.

This reverts commit 3df97e3.

jreback · 2018-02-24T14:54:20Z

pandas/io/formats/style.py

@@ -63,6 +63,8 @@ class Styler(object):
        a unique identifier to avoid CSS collisons; generated automatically
    caption: str, default None
        caption to attach to the table
+    disabled_mathjax: bool, default False


rather than an option prefer this to be an options as @TomAugspurger discussed in the orgiinal issue, and IIRC this should only be handled in the to_html, and NOT in the styler

Default value is True to maintain existing behavior.

codecov · 2018-02-24T15:34:14Z

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The diff coverage is 91.66%.

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##             master   #19856   +/-   ##
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#single	`41.82% <16.66%> (?)`

Impacted Files	Coverage Δ
pandas/io/formats/format.py	`96.26% <100%> (ø)`
pandas/core/config_init.py	`100% <100%> (ø)`
pandas/io/formats/style.py	`96.03% <85.71%> (ø)`

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TomAugspurger

Thanks, your approach seems reasonable.

As far as testing goes, could you add one that calls _repr_html_ with the default and in a context manager with this set to false. Then you can assert that tex2jax_ignore is or isn't in the output.

Also we'll want to add a release note.

TomAugspurger · 2018-02-24T16:36:41Z

doc/source/options.rst

@@ -402,6 +402,10 @@ display.html.table_schema               False        Whether to publish a Table
 display.html.border                     1            A ``border=value`` attribute is
                                                     inserted in the ``<table>`` tag
                                                     for the DataFrame HTML repr.
+display.html.use_mathjax                True         When True, IPython notebook will process 


IPython -> Jupyter

I'll change this, but just want to let you know that I used IPython instead of Jupyter for consistency with the documentation for other options. Perhaps these also need updating?

Sure, that'd be good to correct them all.

There are 148 matches across 41 files for IPython (case sensitive). Not all of these need changing – it's quite nuanced. This is probably better left for a separate PR.

With regards to this PR, shall I use Jupyter or IPython when documenting this new option?

TomAugspurger · 2018-02-24T16:37:49Z

pandas/core/config_init.py

@@ -207,6 +207,12 @@ def use_numexpr_cb(key):
 (currently both are identical)
 """

+pc_html_use_mathjax_doc = """\
+: boolean
+    When True, IPython notebook will process table contents using MathJax,


IPython -> Jupyter

jreback · 2018-02-24T16:45:26Z

looks much nicer to me.

jreback

can you add a whatsnew note in Other Enhancements, announcing the new option, ref this PR number

jreback · 2018-02-24T17:15:19Z

doc/source/whatsnew/v0.23.0.txt

@@ -296,6 +296,7 @@ Other Enhancements
 - :class:`IntervalIndex` and its associated constructor methods (``from_arrays``, ``from_breaks``, ``from_tuples``) have gained a ``dtype`` parameter (:issue:`19262`)
 - Added :func:`SeriesGroupBy.is_monotonic_increasing` and :func:`SeriesGroupBy.is_monotonic_decreasing` (:issue:`17015`)
 - :func:`DataFrame.from_dict` now accepts a ``columns`` argument that can be used to specify the column names when ``orient='index'`` is used (:issue:`18529`)
+- Added option ``display.html.use_mathjax`` so that MathJax can be disabled when rendering DataFrames in Jupyter notebooks (:issue:`19856`, :issue:`#19824`)


no # in the issue number

double backticks on DataFrame and Jupyter

maybe a link for MathJax?

jreback · 2018-02-24T17:18:39Z

pandas/core/frame.py

+            use_mathjax = get_option("display.html.use_mathjax")
+
+            classes = []
+            if not use_mathjax:


this only should be here an not in HTMLFormatter itself?

what about Series._repr_html ?

I think the reason it is not in HTMLFormatter is that MathJax is a feature of the Jupyter environment, and so this is specific to _repr_html_. See #19824 (comment).

I agree that this should apply to Series too.

davidchall · 2018-02-24T18:18:24Z

@jreback @TomAugspurger

Series doesn't actually have a _repr_html_ method right now. Now that I've explored the code a bit more, I think I agree with @jreback that this new logic should instead go in HTMLFormatter. If Series were given a _repr_html_ method then it would probably use HTMLFormatter, so would automatically get this new logic.

However, I have noticed that Styler._repr_html_() uses a completely separate set of logic from DataFrame._repr_html_(). This means that the new display.html.use_mathjax option is not respected when using df.style. There it seems that the class="tex2jax_ignore" would need to be injected into the table_attributes variable. Any thoughts on this?

davidchall · 2018-03-01T06:05:17Z

@jreback @TomAugspurger I think I resolved the remaining problems. Please let me know if you are happy to merge, and I can rebase and squash the commits.

jreback · 2018-03-01T11:33:57Z

pandas/tests/io/formats/test_format.py

@@ -1434,6 +1434,13 @@ def test_repr_html(self):

        tm.reset_display_options()

+    def test_repr_html_mathjax(self):


can you add a test for Series as well

We don't have a repr_html for series yet.

TomAugspurger · 2018-03-01T12:42:57Z

pandas/tests/io/formats/test_format.py

@@ -1434,6 +1434,13 @@ def test_repr_html(self):

        tm.reset_display_options()

+    def test_repr_html_mathjax(self):


We don't have a repr_html for series yet.

TomAugspurger · 2018-03-01T12:45:53Z

pandas/io/formats/style.py

@@ -325,9 +325,19 @@ def format_attr(pair):
                                  .format(row=r, col=c)})
            body.append(row_es)

+        table_attr = self.table_attributes


Hmmm, I'm not sure about the option affecting Styler. Does anyone else (@jorisvandenbossche, @chris-b1) have thoughts?

Adding classes to the Styler is pretty easy, and you're always able to add them since you're generating the Styler. With DataFrame._repr_html, you don't have that option.

It's true this issue is solved by df.style.set_table_attributes('class="tex2jax_ignore"'). One could argue that this PR is unnecessary because the solution is already possible in pandas.

But this solution requires knowledge of how MathJax works – something that I've learnt whilst making this PR. The new option display.html.use_mathjax is there to make it easier for users to find the solution.

To be clear, the changes to frames repr html are great.

I just worry about injecting “noise” into Styler’s generated HTML from a config option, when it’s relatively easy to do that yourself.

That said, an extra class isn’t the worst thing in the world, and it’s simple to toggle on and off. Your current PR is probably fine.

Yeah, I could see the argument for not doing it in Styler but I agree the PR is fine, especially where it is off by default, and is sort of an obscure thing to look up.

TomAugspurger · 2018-03-01T12:47:04Z

This all looks good. I'm +1 if others are +1 on the option affecting Styler as well.

jreback · 2018-03-01T23:06:26Z

thanks @davidchall very nice!

@TomAugspurger

commit df2e361 Author: Jeff Reback <jeff@reback.net> Date: Sun Mar 11 18:33:25 2018 -0400 LINT: fixing commit f1c0b7c Author: David Polo <delkk0@users.noreply.github.com> Date: Sun Mar 11 22:54:27 2018 +0100 DOC: Improved the docstring of pandas.plotting._core.FramePlotMethods… (pandas-dev#20157) * DOC: Improved the docstring of pandas.plotting._core.FramePlotMethods.barh() - Added examples section - Added extended summary - Added argument explanation * DOC: Improved the docstring of pandas.plotting._core.FramePlotMethods.barh() - Correcting PR comments * DOC: Improved the docstring of pandas.plotting._core.FramePlotMethods.barh() - Adding defaults for variables. * Update reference commit 0780193 Author: Jonas Schulze <jonas.schulze7@t-online.de> Date: Sun Mar 11 22:37:37 2018 +0100 DOC: update the pandas.DataFrame.plot.density docstring (pandas-dev#20236) * DOC: update the pandas.DataFrame.plot.kde and pandas.Series.plot.kde docstrings Unfortunately, I was not able to compute a kernel estimate of a two-dimensional random variable. 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Author: DataOmbudsman <DataOmbudsman@users.noreply.github.com> Date: Wed Mar 7 14:56:49 2018 +0100 DOC: updating docstring of Index.shift (pandas-dev#19996) commit 09c416c Author: William Ayd <william.ayd@icloud.com> Date: Wed Mar 7 05:56:16 2018 -0800 DOC: Updated kurt docstring (for pandas sprint) (pandas-dev#19999) commit ad15f80 Author: Kate Surta <kate.surta@gmail.com> Date: Wed Mar 7 16:55:48 2018 +0300 TST: Fix wrong argument in TestDataFrameAlterAxes.test_set_index_dst (pandas-dev#20019) commit f6ee9ac Author: Jeff Reback <jeff@reback.net> Date: Wed Mar 7 08:55:33 2018 -0500 TST: xfail clip tests under numpy-dev (pandas-dev#20035) xref pandas-dev#19976 commit 397e296 Author: Jeff Reback <jeff@reback.net> Date: Wed Mar 7 08:15:49 2018 -0500 TST: xfail some tests for mpl 2.2 compat (pandas-dev#20033) xref pandas-dev#20031 commit 56939b4 Author: luzpaz <luzpaz@users.noreply.github.com> Date: Wed Mar 7 06:10:39 2018 -0500 DOC: misc typos (pandas-dev#20029) commit 01b91c2 Author: alinde1 <32714875+alinde1@users.noreply.github.com> Date: Tue Mar 6 22:47:45 2018 +0100 DOC: is confusing for ddof parameter of sem, var and std functions (pandas-dev#19986) commit db82165 Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Tue Mar 6 22:42:41 2018 +0100 CLN/DOC: cache_readonly: remove allow_setting + preserve docstring (pandas-dev#19991) commit e02f737 Author: Tom Augspurger <TomAugspurger@users.noreply.github.com> Date: Tue Mar 6 09:38:32 2018 -0600 DOC: add doc on ExtensionArray and extending pandas (pandas-dev#19936) commit 0ca77b3 Author: jbrockmendel <jbrockmendel@gmail.com> Date: Tue Mar 6 04:27:21 2018 -0800 Datetimelike add/sub catch cases more explicitly, tests (pandas-dev#19912) commit 0038bad Author: Matthew Roeschke <emailformattr@gmail.com> Date: Tue Mar 6 04:25:55 2018 -0800 month_name/day_name warnings followup (pandas-dev#20010) commit fd63c90 Author: Ksenia <bobrovaksenia@gmail.com> Date: Tue Mar 6 13:25:37 2018 +0100 TST: split series/test_indexing.py (pandas-dev#18614) (pandas-dev#20006) commit 6366bf0 Author: Jeff Reback <jeff@reback.net> Date: Tue Mar 6 07:25:17 2018 -0500 TST: clean deprecation warnings for xref pandas-dev#19980 (pandas-dev#20013) xfail some mpl > 2.1.2 tests commit fe61299 Author: William Ayd <william.ayd@icloud.com> Date: Tue Mar 6 00:30:13 2018 -0800 DOC: fixed dynamic import mechanics of make.py (pandas-dev#20005) commit 8a084eb Author: Grant Smith <grantsmith@gmail.com> Date: Tue Mar 6 03:29:26 2018 -0500 CLN: deprecate the pandas.tseries.plotting.tsplot function (GH18627) (pandas-dev#19980) commit aedbd94 Author: Jeff Reback <jeff@reback.net> Date: Mon Mar 5 06:36:41 2018 -0500 TST: text correction, xref pandas-dev#19987 commit cbffd19 Author: Bhavesh Poddar <bhavesh13103507@gmail.com> Date: Mon Mar 5 06:34:59 2018 -0500 fixed pytest deprecation warning (pandas-dev#19987) commit 058a16c Author: Matthew Roeschke <emailformattr@gmail.com> Date: Mon Mar 5 03:23:49 2018 -0800 CLN: Use generators in builtin functions (pandas-dev#19989) commit 607910b Author: Matthew Roeschke <emailformattr@gmail.com> Date: Sun Mar 4 12:15:37 2018 -0800 Add month names (pandas-dev#18164) commit 2fad756 Author: jbrockmendel <jbrockmendel@gmail.com> Date: Sun Mar 4 12:00:39 2018 -0800 transition period_helper to use pandas_datetimestruct (pandas-dev#19918) commit 53606ff Author: Liam3851 <david.krych@gmail.com> Date: Sun Mar 4 14:58:22 2018 -0500 BUG: Compat for pre-0.20 TimedeltaIndex and Float64Index pickles pandas-dev#19939 (pandas-dev#19943) commit 0bfb61b Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Fri Mar 2 22:35:45 2018 +0100 DOC: small updates to make.py script (pandas-dev#19951) * enable passing verbosity flag to sphinx * alias api for api.rst commit d1f3689 Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Fri Mar 2 22:33:48 2018 +0100 DOC: fix some sphinx syntax warnings (pandas-dev#19962) commit 49f09cc Author: Tom Augspurger <TomAugspurger@users.noreply.github.com> Date: Fri Mar 2 15:20:28 2018 -0600 API: Added ExtensionArray constructor from scalars (pandas-dev#19913) commit d30d165 Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Fri Mar 2 22:18:10 2018 +0100 DOC: update docstring validation script (pandas-dev#19960) commit a7a7f8c Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Fri Mar 2 13:49:59 2018 +0100 DOC: clarify version of ActivePython that includes pandas (pandas-dev#19964) commit b167483 Author: Gina <Dr-G@users.noreply.github.com> Date: Fri Mar 2 05:33:49 2018 -0600 DOC: update install.rst to include ActivePython distribution (pandas-dev#19908) commit e6c7dea Author: topper-123 <terji78@gmail.com> Date: Fri Mar 2 11:19:07 2018 +0000 ENH: Let initialisation from dicts use insertion order for python >= 3.6 (part III) (pandas-dev#19884) commit d615f86 Author: Marc Garcia <garcia.marc@gmail.com> Date: Fri Mar 2 09:39:45 2018 +0000 DOC: Adding script to validate docstrings, and generate list of all functions/methods with state (pandas-dev#19898) commit 5f271eb Author: Yian <yian.shang@gmail.com> Date: Fri Mar 2 00:13:58 2018 +0100 BUG: Adding skipna as an option to groupby cumsum and cumprod (pandas-dev#19914) commit 072545d Author: David C Hall <davidchall@users.noreply.github.com> Date: Thu Mar 1 15:06:20 2018 -0800 ENH: Add option to disable MathJax (pandas-dev#19824). (pandas-dev#19856) commit d44a6ec Author: Yian <yian.shang@gmail.com> Date: Fri Mar 2 00:02:31 2018 +0100 Making to_datetime('today') and Timestamp('today') consistent (pandas-dev#19937) commit 87fefe2 Author: jbrockmendel <jbrockmendel@gmail.com> Date: Thu Mar 1 14:54:42 2018 -0800 dispatch Series[datetime64] comparison ops to DatetimeIndex (pandas-dev#19800) commit 9242248 Author: Matthew Roeschke <emailformattr@gmail.com> Date: Thu Mar 1 14:50:35 2018 -0800 BUG: DataFrame.diff(axis=0) with DatetimeTZ data (pandas-dev#19773) commit c5a1ef1 Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Thu Mar 1 22:48:39 2018 +0100 DOC: remove empty attribute/method lists from class docstrings html page (pandas-dev#19949) commit 9958ce6 Author: jschendel <jschendel@users.noreply.github.com> Date: Thu Mar 1 04:14:19 2018 -0700 BUG: Preserve column metadata with DataFrame.astype (pandas-dev#19948) commit 3b4eb8d Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Thu Mar 1 12:12:35 2018 +0100 CLN: remove redundant clean_fill_method calls (pandas-dev#19947) commit c8859b5 Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Date: Thu Mar 1 10:35:05 2018 +0100 DOC: script to build single docstring page (pandas-dev#19840) commit 52559f5 Author: Matthew Roeschke <emailformattr@gmail.com> Date: Wed Feb 28 17:32:24 2018 -0800 ENH: Allow Timestamp to accept Nanosecond argument (pandas-dev#19889) commit 4a27697 Author: William Ayd <william.ayd@icloud.com> Date: Wed Feb 28 17:30:18 2018 -0800 Cythonized GroupBy any (pandas-dev#19722) commit 96b8bb1 Author: jschendel <jschendel@users.noreply.github.com> Date: Wed Feb 28 18:07:15 2018 -0700 ENH: Implement DataFrame.astype('category') (pandas-dev#18099) commit 6ef4be3 Author: Liam3851 <david.krych@gmail.com> Date: Wed Feb 28 06:14:11 2018 -0500 ENH: Allow literal (non-regex) replacement using .str.replace pandas-dev#16808 (pandas-dev#19584) commit 318a287 Author: README Bot <35302948+codetriage-readme-bot@users.noreply.github.com> Date: Wed Feb 28 05:07:28 2018 -0600 Add CodeTriage badge to pandas-dev/pandas (pandas-dev#19928) Adds a badge showing the number of people helping this repo on CodeTriage. commit 14a38a6 Author: Chris Catalfo <ccatalfo@users.noreply.github.com> Date: Wed Feb 28 03:14:23 2018 -0500 DOC: fixes pipe example in basics.rst due to statsmodel changes (pandas-dev#19923) commit dfe9d4a Author: Phil Ngo <ngo.phil@gmail.com> Date: Wed Feb 28 00:05:56 2018 -0800 DOC: fix Series.reset_index example (pandas-dev#19930) commit 9bdc5c8 Author: William Ayd <william.ayd@icloud.com> Date: Tue Feb 27 16:16:48 2018 -0800 Consistent Timedelta Writing for all Excel Engines (pandas-dev#19921) commit 61211a8 Author: jbrockmendel <jbrockmendel@gmail.com> Date: Tue Feb 27 16:11:47 2018 -0800 Assorted _libs cleanups (pandas-dev#19887)

ENH: Add Styler.disable_mathjax() method (pandas-dev#19824).

3df97e3

This prevents MathJax from processing table contents.

gfyoung added Enhancement Visualization plotting labels Feb 23, 2018

gfyoung requested a review from TomAugspurger February 23, 2018 09:17

davidchall mentioned this pull request Feb 23, 2018

Provide styling option to escape dollar signs #19824

Closed

Revert "ENH: Add Styler.disable_mathjax() method (pandas-dev#19824)."

f48f587

This reverts commit 3df97e3.

jreback requested changes Feb 24, 2018

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ENH: Add display.html.use_mathjax option (pandas-dev#19824).

9d97bfd

Default value is True to maintain existing behavior.

davidchall changed the title ~~ENH: Add Styler.disable_mathjax() method (#19824).~~ ENH: Add option to disable MathJax (#19824). Feb 24, 2018

TomAugspurger reviewed Feb 24, 2018

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jreback approved these changes Feb 24, 2018

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Added release note

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jreback requested changes Feb 24, 2018

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David Hall added 2 commits February 24, 2018 09:49

Fix release note

95f7d14

Replace IPython with Jupyter in docs

5c71bf1

David Hall added 3 commits February 24, 2018 10:32

Move logic from DataFrame to HTMLFormatter

9b287aa

Add tests for both format and style versions of _repr_html_()

400f211

Inject tex2jax_ignore into table class attribute in Styler.

15961e1

jreback requested changes Mar 1, 2018

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TomAugspurger reviewed Mar 1, 2018

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jreback added 2 commits March 1, 2018 18:05

issue number

771e9a6

Merge branch 'master' into PR_TOOL_MERGE_PR_19856

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jreback added this to the 0.23.0 milestone Mar 1, 2018

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jreback merged commit 072545d into pandas-dev:master Mar 1, 2018

davidchall deleted the disable-mathjax branch July 24, 2018 21:40

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ENH: Add option to disable MathJax (#19824). #19856

ENH: Add option to disable MathJax (#19824). #19856

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		@@ -1434,6 +1434,13 @@ def test_repr_html(self):

		tm.reset_display_options()

		def test_repr_html_mathjax(self):

ENH: Add option to disable MathJax (#19824). #19856

ENH: Add option to disable MathJax (#19824). #19856

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