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Issue#149 differential evolution mcmc #158

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merged 15 commits into from
Jan 12, 2018
Merged

Issue#149 differential evolution mcmc #158

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0e3c442
Basic differential evolution methods implemented
ben18785 Dec 27, 2017
61d02c2
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ben18785 Dec 27, 2017
406f2ab
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ben18785 Dec 27, 2017
588ba7d
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ben18785 Dec 27, 2017
6dae83b
Added DREAM
ben18785 Dec 27, 2017
2d7b70b
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ben18785 Dec 27, 2017
305d214
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ben18785 Dec 27, 2017
061f0e4
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ben18785 Dec 27, 2017
0107287
Added variable CR probability
ben18785 Dec 28, 2017
7c4ebc8
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ben18785 Dec 28, 2017
04f5946
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ben18785 Dec 28, 2017
66afc28
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ben18785 Dec 28, 2017
93a081a
Make examples format consistent and split example into two
chonlei Dec 28, 2017
482f1b9
Added DE-MCMC class to documentation
chonlei Dec 28, 2017
6ee8e54
Merge branch 'master' into issue#149-differential-evolution-mcmc
ben18785 Jan 12, 2018
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9 changes: 9 additions & 0 deletions docs/source/mcmc/differential_evolution_mcmc.rst
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@@ -0,0 +1,9 @@
***************************
Differential Evolution MCMC
***************************

.. module:: pints

.. autoclass:: DifferentialEvolutionMCMC

.. autoclass:: DreamMCMC
2 changes: 1 addition & 1 deletion docs/source/mcmc/index.rst
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Expand Up @@ -11,6 +11,6 @@ parameters that maximise a :class:`LogLikelihood<pints.LogLikelihood>`.
.. toctree::

adaptive_covariance_mcmc
differential_evolution_mcmc
mcmc


155 changes: 155 additions & 0 deletions examples/inference-differential-evolution-mcmc.ipynb
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155 changes: 155 additions & 0 deletions examples/inference-dream-mcmc.ipynb
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2 changes: 2 additions & 0 deletions pints/__init__.py
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Expand Up @@ -90,6 +90,8 @@ def version(formatted=False):
#
from ._mcmc import MCMC
from ._mcmc._adaptive import AdaptiveCovarianceMCMC, adaptive_covariance_mcmc
from ._mcmc._differentialEvolution import DifferentialEvolutionMCMC, differential_evolution_mcmc
from ._mcmc._differentialEvolution import DreamMCMC
from ._mcmc._result import McmcResultObject

#
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