Merge pull request #36 from andreped/remove-dir

Remove .raidionics/ directory during install and uninstall for Windows [skip ci]

README.md

@@ -8,8 +8,8 @@
 ![CI](https://github.com/dbouget/Raidionics/workflows/Build%20macOS/badge.svg?branch=master&event=push)
 
 Software to automatically segment brain tumors from pre- and post-operative MRI scans, compute their characteristics (e.g., volume, location), and generate a standardized report.
-The software was first introduced in the article "Brain tumor preoperative surgery imaging: models and software solutions for
-segmentation and standardized reporting", which has been published in [Frontiers in Neurology](https://www.frontiersin.org/articles/10.3389/fneur.2022.932219/full).  
+The software was first introduced in the article _"Brain tumor preoperative surgery imaging: models and software solutions for
+segmentation and standardized reporting"_, which has been published in [Frontiers in Neurology](https://www.frontiersin.org/articles/10.3389/fneur.2022.932219/full).  
 
 <p align="center">
 <img src="assets/images/Preview_SingleUse.gif" width="85%">
@@ -23,9 +23,10 @@ The current version (i.e., v1.2) provides a more user-friendly graphical user in
 
 
 ## Installation
-An installer is provided for the three main Operating Systems: Windows (v10, 64-bit), Ubuntu Linux (>= 18.04), macOS (>= 10.15 Catalina) and macOS ARM (M1 chip). 
+An installer is provided for the three main Operating Systems: Windows (v10, 64-bit), Ubuntu Linux (>= 18.04), macOS (>= 10.15 Catalina), and macOS ARM (M1 chip). 
 The software can be downloaded from [here](https://github.com/dbouget/Raidionics/releases) (see **Assets**).  
-N-B: For re-installation, it is recommended to manually delete the .raidionics folder located inside your home directory.
+
+**NOTE:** For reinstallation, it is recommended to _manually delete_ the `.raidionics/` folder located inside your home directory.
 
 These steps are only needed to do once:
 1) Download the installer to your Operating System.
@@ -36,12 +37,13 @@ These steps are only needed to do once:
 If you are using Raidionics in your research, please use the following citation:
 ```
 @article{10.3389/fneur.2022.932219,
-title={Preoperative Brain Tumor Imaging: Models and Software for Segmentation and Standardized Reporting},
-author={Bouget, David and Pedersen, André and Jakola, Asgeir S. and Kavouridis, Vasileios and Emblem, Kyrre E. and Eijgelaar, Roelant S. and Kommers, Ivar and Ardon, Hilko and Barkhof, Frederik and Bello, Lorenzo and Berger, Mitchel S. and Conti Nibali, Marco and Furtner, Julia and Hervey-Jumper, Shawn and Idema, Albert J. S. and Kiesel, Barbara and Kloet, Alfred and Mandonnet, Emmanuel and Müller, Domenique M. J. and Robe, Pierre A. and Rossi, Marco and Sciortino, Tommaso and Van den Brink, Wimar A. and Wagemakers, Michiel and Widhalm, Georg and Witte, Marnix G. and Zwinderman, Aeilko H. and De Witt Hamer, Philip C. and Solheim, Ole and Reinertsen, Ingerid},
-journal={Frontiers in Neurology},
-volume={13},
-year={2022},
-url={https://www.frontiersin.org/articles/10.3389/fneur.2022.932219},
-doi={10.3389/fneur.2022.932219},
-issn={1664-2295}}
+    title={Preoperative Brain Tumor Imaging: Models and Software for Segmentation and Standardized Reporting},
+    author={Bouget, David and Pedersen, André and Jakola, Asgeir S. and Kavouridis, Vasileios and Emblem, Kyrre E. and Eijgelaar, Roelant S. and Kommers, Ivar and Ardon, Hilko and Barkhof, Frederik and Bello, Lorenzo and Berger, Mitchel S. and Conti Nibali, Marco and Furtner, Julia and Hervey-Jumper, Shawn and Idema, Albert J. S. and Kiesel, Barbara and Kloet, Alfred and Mandonnet, Emmanuel and Müller, Domenique M. J. and Robe, Pierre A. and Rossi, Marco and Sciortino, Tommaso and Van den Brink, Wimar A. and Wagemakers, Michiel and Widhalm, Georg and Witte, Marnix G. and Zwinderman, Aeilko H. and De Witt Hamer, Philip C. and Solheim, Ole and Reinertsen, Ingerid},
+    journal={Frontiers in Neurology},
+    volume={13},
+    year={2022},
+    url={https://www.frontiersin.org/articles/10.3389/fneur.2022.932219},
+    doi={10.3389/fneur.2022.932219},
+    issn={1664-2295}
+}
 ```

assets/Raidionics.nsi

@@ -108,6 +108,9 @@ WriteRegStr ${REG_ROOT} "${UNINSTALL_PATH}"  "DisplayIcon" "$INSTDIR\images\raid
 WriteRegStr ${REG_ROOT} "${UNINSTALL_PATH}"  "DisplayVersion" "${VERSION}"
 WriteRegStr ${REG_ROOT} "${UNINSTALL_PATH}"  "Publisher" "${COMP_NAME}"
 
+# Delete .raidionics/ directory if it exists
+RMDir /r "$PROFILE\.raidionics\"
+
 # Create directory
 CreateDirectory $INSTDIR
 
@@ -130,18 +133,19 @@ SectionEnd
 
 ######################################################################
 
+# Remove location where program is installed as well as addition .raidionics/ directory in home directory
 Section Uninstall
 ${INSTALL_TYPE}
-RmDir /r "$INSTDIR"
-# RmDir /r "$PROFILE/.raidionics/resources"
+RMDir /r "$INSTDIR"
+RMDir /r "$PROFILE\.raidionics\"
 
 !ifdef REG_START_MENU
 !insertmacro MUI_STARTMENU_GETFOLDER "Application" $SM_Folder
 Delete "$SMPROGRAMS\$SM_Folder\${APP_NAME}.lnk"
 Delete "$SMPROGRAMS\$SM_Folder\Uninstall ${APP_NAME}.lnk"
 Delete "$DESKTOP\${APP_NAME}.lnk"
 
-RmDir "$SMPROGRAMS\$SM_Folder"
+RMDir "$SMPROGRAMS\$SM_Folder"
 !endif
 
 DeleteRegKey ${REG_ROOT} "${REG_APP_PATH}"