fix: panic when dumping memory profile #12276

fuyufjh · 2023-09-13T09:21:14Z

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What's changed and what's your intention?

Resolves #12254

See also risingwavelabs/jemallocator@c72ce6a

The bug is dump.prefix is write-only. Now use opt.dump_prefix instead.

Also resolves #12186 (comment)

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BugenZhao · 2023-09-13T09:47:24Z

src/compute/Cargo.toml

@@ -55,7 +55,7 @@ tower = { version = "0.4", features = ["util", "load-shed"] }
 tracing = "0.1"

 [target.'cfg(target_os = "linux")'.dependencies]
-tikv-jemalloc-ctl = { git = "https://github.com/risingwavelabs/jemallocator.git", rev = "b7f9f3" }
+tikv-jemalloc-ctl = { git = "https://github.com/risingwavelabs/jemallocator.git", rev = "64a2d9" }


Also use the workspace dependency? 👀

tikv-jemalloc-ctl is different from tikv-jemallocator, and it's only used in compute for memory controller policy. Are you sure to move it to workspace dependency as well?

There can never exist two different version of jemalloc ctl
/allocator. So use worksapce makes sense to me.

also it can be used in all nodes for profiling

tikv-jemalloc-ctl is different from tikv-jemallocator, and it's only used in compute for memory controller policy.

Oh, I didn't realize this.

also it can be used in all nodes for profiling

Agree. Let's do it upon that time!

BugenZhao · 2023-09-13T10:11:30Z

src/compute/Cargo.toml

@@ -55,7 +55,7 @@ tower = { version = "0.4", features = ["util", "load-shed"] }
 tracing = "0.1"

 [target.'cfg(target_os = "linux")'.dependencies]
-tikv-jemalloc-ctl = { git = "https://github.com/risingwavelabs/jemallocator.git", rev = "b7f9f3" }
+tikv-jemalloc-ctl = { git = "https://github.com/risingwavelabs/jemallocator.git", rev = "64a2d9" }


tikv-jemalloc-ctl is different from tikv-jemallocator, and it's only used in compute for memory controller policy.

Oh, I didn't realize this.

fuyufjh · 2023-09-14T04:26:00Z

Encountered a weird problem: simulation test stack overflowed. @wangrunji0408 is helping with it.

gdb_bt.txt

wangrunji0408 · 2023-09-14T04:36:59Z

Encountered a weird problem: simulation test stack overflowed. @wangrunji0408 is helping with it.

gdb_bt.txt

Found the problem from stack trace:
jemalloc init -> get system time -> intercepted by madsim -> get thread local variable -> malloc -> jemalloc init (infinite loop 💥)

I can't reproduce it on my Mac. Looks like the problem is only on Linux.

fuyufjh · 2023-09-14T05:09:49Z

It might be related to unprefixed_malloc_on_supported_platforms. Since I moved the dependency to workspace level, this is enabled globally. Let me try to disable it for simulation test.

Looks like the problem is only on Linux.

Yes, because unprefixed jemalloc is not available in MacOS.

wangrunji0408 · 2023-09-14T06:05:13Z

It might be related to unprefixed_malloc_on_supported_platforms.

Yes. I can reproduce it on Linux with this feature enabled. And the bug disappeared when I disabled this feature.

I'm curious about what specific things this feature does. 🤯
https://github.com/tikv/jemallocator/blob/0f8983f71813c6e052c6ab445e965c4b0a7e251e/jemalloc-sys/README.md?plain=1#L72

BugenZhao · 2023-09-14T06:06:23Z

Since I moved the dependency to workspace level, this is enabled globally.

Oops. 🫨 I'm not sure about this. Is this true?

codecov · 2023-09-14T06:33:05Z

Codecov Report

Merging #12276 (0259125) into main (c07633a) will decrease coverage by 0.01%.
Report is 3 commits behind head on main.
The diff coverage is 0.00%.

@@            Coverage Diff             @@
##             main   #12276      +/-   ##
==========================================
- Coverage   69.97%   69.97%   -0.01%     
==========================================
  Files        1408     1408              
  Lines      235155   235154       -1     
==========================================
- Hits       164550   164549       -1     
  Misses      70605    70605

Flag	Coverage Δ
rust	`69.97% <0.00%> (-0.01%)`	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed	Coverage Δ
src/compute/src/memory_management/policy.rs	`0.00% <0.00%> (ø)`

... and 1 file with indirect coverage changes

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fuyufjh · 2023-09-14T08:55:57Z

It might be related to unprefixed_malloc_on_supported_platforms.

Yes. I can reproduce it on Linux with this feature enabled. And the bug disappeared when I disabled this feature.

I'm curious about what specific things this feature does. 🤯 https://github.com/tikv/jemallocator/blob/0f8983f71813c6e052c6ab445e965c4b0a7e251e/jemalloc-sys/README.md?plain=1#L72

It's to solve #9669

commit c82fc9c Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon Sep 18 08:37:33 2023 +0000 chore(deps): Bump chrono from 0.4.30 to 0.4.31 (#12359) Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: Runji Wang <wangrunji0408@163.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Runji Wang <wangrunji0408@163.com> Co-authored-by: TennyZhuang <zty0826@gmail.com> commit cbdc1ac Author: Huangjw <1223644280@qq.com> Date: Mon Sep 18 16:22:35 2023 +0800 chore(ci): move release jobs to main-cron pipeline (#12339) commit b37a19c Author: Yuhao Su <31772373+yuhao-su@users.noreply.github.com> Date: Mon Sep 18 16:18:01 2023 +0800 feat(dashboard): add memory profiling (#12052) commit 71d8170 Author: TennyZhuang <zty0826@gmail.com> Date: Mon Sep 18 15:58:26 2023 +0800 refactor(expr): allow defining functions in frontend (#12287) Signed-off-by: TennyZhuang <zty0826@gmail.com> Co-authored-by: zwang28 <70626450+zwang28@users.noreply.github.com> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> commit cedaec9 Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Mon Sep 18 15:54:10 2023 +0800 feat(optimizer): support agg group by simplify rule (#12349) commit 71d9b0b Author: Noel Kwan <47273164+kwannoel@users.noreply.github.com> Date: Mon Sep 18 15:32:00 2023 +0800 feat(meta): update StreamJob status on finish (#12342) commit 784fe56 Author: zwang28 <70626450+zwang28@users.noreply.github.com> Date: Mon Sep 18 14:47:49 2023 +0800 fix(backup): ensure correct delta log order (#12371) commit 711ecd5 Author: congyi wang <58715567+wcy-fdu@users.noreply.github.com> Date: Mon Sep 18 14:11:24 2023 +0800 feat(state_table): add iterator sub range under a certain pk prefix (#12251) commit 1877aed Author: xiangjinwu <17769960+xiangjinwu@users.noreply.github.com> Date: Mon Sep 18 13:49:15 2023 +0800 refactor(sink): impl SinkFormatter for AppendOnly and Upsert (#12321) commit f304ed2 Author: xxchan <xxchan22f@gmail.com> Date: Sun Sep 17 20:20:17 2023 +0800 revert: Revert "chore: add platforms to hakari (#12333)" (#12363) commit a975d93 Author: Bohan Zhang <tabvision@bupt.icu> Date: Sun Sep 17 19:04:24 2023 +0800 fix: handle kafka sink message timeout error (#12350) commit 8ef74ad Author: Runji Wang <wangrunji0408@163.com> Date: Sat Sep 16 12:16:02 2023 +0800 fix(udf): handle visibility of input chunks in UDTF (#12357) Signed-off-by: Runji Wang <wangrunji0408@163.com> commit 31fdc26 Author: Xu <xzhseh@gmail.com> Date: Fri Sep 15 21:01:14 2023 -0400 feat(expr): switch to `fancy-regex` crate & update the original version (#12329) Co-authored-by: xzhseh <xzhseh@users.noreply.github.com> commit 0032145 Author: Runji Wang <wangrunji0408@163.com> Date: Fri Sep 15 16:57:25 2023 +0800 refactor(expr): support variadic function in `#[function]` macro (#12178) Signed-off-by: Runji Wang <wangrunji0408@163.com> commit 467ba4b Author: stonepage <40830455+st1page@users.noreply.github.com> Date: Fri Sep 15 16:28:13 2023 +0800 fix: stream backfill executor use correct schema (#12314) Co-authored-by: Noel Kwan <47273164+kwannoel@users.noreply.github.com> commit c443197 Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Fri Sep 15 16:22:13 2023 +0800 feat(optimizer): support correlated column in order by (#12341) commit 8a36ca3 Author: Noel Kwan <47273164+kwannoel@users.noreply.github.com> Date: Fri Sep 15 16:11:03 2023 +0800 feat(meta): Add `creating_status` field for stream jobs (#12330) commit bf5b14e Author: zwang28 <70626450+zwang28@users.noreply.github.com> Date: Fri Sep 15 16:06:17 2023 +0800 chore: lift decoding message size limit for ddl client (#12340) commit c0060b2 Author: zwang28 <70626450+zwang28@users.noreply.github.com> Date: Fri Sep 15 15:32:14 2023 +0800 feat(meta): add hummock config relevant tables to rw_catalog (#12337) commit 59bb645 Author: xxchan <xxchan22f@gmail.com> Date: Fri Sep 15 14:54:54 2023 +0800 chore: add platforms to hakari (#12333) Signed-off-by: Runji Wang <wangrunji0408@163.com> Co-authored-by: Runji Wang <wangrunji0408@163.com> commit 7baa27f Author: Bugen Zhao <i@bugenzhao.com> Date: Fri Sep 15 14:00:14 2023 +0800 chore: split full debug info for release build (#12255) Signed-off-by: Bugen Zhao <i@bugenzhao.com> commit a99e6f3 Author: Richard Chien <stdrc@outlook.com> Date: Fri Sep 15 13:58:19 2023 +0800 fix(stream): fix pk indices of GroupTopN executors (#12304) Signed-off-by: Richard Chien <stdrc@outlook.com> commit 43c010e Author: Croxx <mrcroxx@outlook.com> Date: Fri Sep 15 11:59:41 2023 +0800 chore: fix comment and metrics (#12331) Signed-off-by: MrCroxx <mrcroxx@outlook.com> commit 214118b Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri Sep 15 10:03:14 2023 +0800 chore(deps): Bump serde_json from 1.0.106 to 1.0.107 (#12322) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> commit 41ebb2a Author: Xu <xzhseh@gmail.com> Date: Thu Sep 14 22:02:08 2023 -0400 fix(regexp): substraction overflow when incorrectly speicifying `start` (#12325) commit a566cfe Author: Xu <xzhseh@gmail.com> Date: Thu Sep 14 12:58:35 2023 -0400 feat(expr): add `array_sum` (#12162) Signed-off-by: Runji Wang <wangrunji0408@163.com> Co-authored-by: Runji Wang <wangrunji0408@163.com> commit 28bbf10 Author: Croxx <mrcroxx@outlook.com> Date: Fri Sep 15 00:40:27 2023 +0800 fix(ci): exclude tikv-jemalloc-sys in hakari check (#12320) Signed-off-by: MrCroxx <mrcroxx@outlook.com> commit 5aa5a47 Author: zwang28 <70626450+zwang28@users.noreply.github.com> Date: Thu Sep 14 21:02:01 2023 +0800 feat(meta): add hummock version relevant tables to rw_catalog (#12309) commit a740364 Author: Huangjw <1223644280@qq.com> Date: Thu Sep 14 19:11:04 2023 +0800 chore(ci): install locales in prebuilt image (#12311) Signed-off-by: Bugen Zhao <i@bugenzhao.com> Co-authored-by: Bugen Zhao <i@bugenzhao.com> commit 0e72056 Author: StrikeW <wangsiyuanse@gmail.com> Date: Thu Sep 14 18:42:34 2023 +0800 refactor(jdbc-sink): execute statements in batch and set isolation level to RC (#12250) commit 827ed5e Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Thu Sep 14 17:31:41 2023 +0800 refactor(connector): migrate cdc source metric from connector to compute (#12283) commit a934185 Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Thu Sep 14 17:31:04 2023 +0800 fix(optimizer): relax scan predicate pull up mapping inverse restriction (#12308) commit db0c099 Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Thu Sep 14 17:30:28 2023 +0800 feat(stream): handling watermark in temporal join (#12302) commit 1ecea63 Author: Bugen Zhao <i@bugenzhao.com> Date: Thu Sep 14 16:43:14 2023 +0800 refactor(risedev): split the steps for building and running playground (#12279) Signed-off-by: Bugen Zhao <i@bugenzhao.com> Co-authored-by: xxchan <xxchan22f@gmail.com> commit ae4b1f8 Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu Sep 14 08:41:29 2023 +0000 chore(deps): Bump clap from 4.4.2 to 4.4.3 (#12245) Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Bugen Zhao <i@bugenzhao.com> commit 7ca370a Author: Croxx <mrcroxx@outlook.com> Date: Thu Sep 14 16:24:19 2023 +0800 feat(refill): fetch whole sst file when refilling (#12265) Signed-off-by: MrCroxx <mrcroxx@outlook.com> commit ec129b6 Author: Yuhao Su <31772373+yuhao-su@users.noreply.github.com> Date: Thu Sep 14 16:04:37 2023 +0800 chore: use cfg! to instead of #cfg[] for jemalloc control policy (#12307) commit 9814af8 Author: Runji Wang <wangrunji0408@163.com> Date: Thu Sep 14 14:45:14 2023 +0800 feat(expr): add `pg_sleep` function (#12294) Signed-off-by: Runji Wang <wangrunji0408@163.com> commit 4525e67 Author: Noel Kwan <47273164+kwannoel@users.noreply.github.com> Date: Thu Sep 14 14:38:03 2023 +0800 feat(stream): support source throttling (#12295) commit 5ffd58d Author: Dylan <chenzl25@mail2.sysu.edu.cn> Date: Thu Sep 14 14:35:03 2023 +0800 refactor(connector): replace validate source rpc with jni (#12270) commit 888f2dd Author: Eric Fu <eric@singularity-data.com> Date: Thu Sep 14 14:32:59 2023 +0800 fix: panic when dumping memory profile (#12276) Signed-off-by: Little-Wallace <bupt2013211450@gmail.com>

fuyufjh added 2 commits September 13, 2023 09:02

fix: prof.prefix is write-only

d1f4a57

put jemallocator in workspace deps

562f2f1

fuyufjh requested review from yuhao-su and xxchan September 13, 2023 09:21

fuyufjh requested a review from a team as a code owner September 13, 2023 09:21

github-actions bot added the type/fix Bug fix label Sep 13, 2023

yuhao-su approved these changes Sep 13, 2023

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BugenZhao approved these changes Sep 13, 2023

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fuyufjh enabled auto-merge September 14, 2023 03:44

fix madsim stack overflow

ffe1c3e

fuyufjh added 2 commits September 14, 2023 06:09

fix apt-get 404

4069c40

Merge remote-tracking branch 'origin/main' into eric/fix_12254

0259125

fuyufjh added this pull request to the merge queue Sep 14, 2023

Merged via the queue into main with commit 888f2dd Sep 14, 2023
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fuyufjh deleted the eric/fix_12254 branch September 14, 2023 06:54

MrCroxx mentioned this pull request Sep 14, 2023

bug(ci): multi-version tikv-jemalloc-sys break docker pipeline #12315

Closed

Li0k pushed a commit that referenced this pull request Sep 15, 2023

fix: panic when dumping memory profile (#12276)

79c660f

fuyufjh added a commit that referenced this pull request Sep 29, 2023

fix: panic when dumping memory profile (#12276)

197a9e6

fuyufjh added a commit that referenced this pull request Sep 29, 2023

fix: panic when dumping memory profile (#12276)

d8c8854

fuyufjh added a commit that referenced this pull request Sep 29, 2023

fix: panic when dumping memory profile (#12276)

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fix: panic when dumping memory profile #12276

fix: panic when dumping memory profile #12276

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fix: panic when dumping memory profile #12276

fix: panic when dumping memory profile #12276

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What's changed and what's your intention?

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