Optional package papilo (dependency of scip) #34726

mkoeppe · 2022-11-05T22:00:13Z

https://github.com/scipopt/papilo/

https://github.com/scipopt/papilo/archive/refs/tags/v2.1.1.tar.gz

Not packaged anywhere - https://repology.org/projects/?search=papilo

scip uses papilo's header-only library, but papilo also likes to build an executable that may depend on scip and other solvers at compile time. - scipopt/papilo#21

New packages needed as dependencies:

https://github.com/oneapi-src/oneTBB - https://repology.org/project/onetbb/versions

CC: @dimpase

Component: packages: optional

Author: Matthias Koeppe

Branch/Commit: 4b71c4a

Reviewer: Dima Pasechnik

Issue created by migration from https://trac.sagemath.org/ticket/34726

The text was updated successfully, but these errors were encountered:

mkoeppe · 2022-11-05T23:35:59Z

Branch: u/mkoeppe/optional_package_papilo__dependency_of_scip_

sagetrac-git · 2022-11-05T23:43:17Z

Commit: 0dfa4b9

sagetrac-git · 2022-11-05T23:43:17Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`0dfa4b9`	`build/pkgs/papilo: New`

mkoeppe · 2022-11-06T00:03:56Z

comment:5

tox -e docker-ubuntu-jammy-standard -- papilo gives

  [papilo-2.1.1]   CMake Error at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake:141 (find_package):
  [papilo-2.1.1]     Could not find a package configuration file provided by
  [papilo-2.1.1]     "boost_program_options" (requested version 1.74.0) with any of the
  [papilo-2.1.1]     following names:
  [papilo-2.1.1]   
  [papilo-2.1.1]       boost_program_optionsConfig.cmake
  [papilo-2.1.1]       boost_program_options-config.cmake
  [papilo-2.1.1]   
  [papilo-2.1.1]     Add the installation prefix of "boost_program_options" to CMAKE_PREFIX_PATH
  [papilo-2.1.1]     or set "boost_program_options_DIR" to a directory containing one of the
  [papilo-2.1.1]     above files.  If "boost_program_options" provides a separate development
  [papilo-2.1.1]     package or SDK, be sure it has been installed.
  [papilo-2.1.1]   Call Stack (most recent call first):
  [papilo-2.1.1]     /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake:258 (boost_find_component)
  [papilo-2.1.1]     /usr/share/cmake-3.22/Modules/FindBoost.cmake:594 (find_package)
  [papilo-2.1.1]     CMakeLists.txt:50 (find_package)

https://stackoverflow.com/questions/20502194/cmake-cannot-find-boost-program-options-on-debian

sagetrac-git · 2022-11-06T00:36:22Z

Branch pushed to git repo; I updated commit sha1. New commits:

`088b11a`	`build/pkgs/boost_cropped/distros/debian.txt: Add libboost-program-options-dev`

sagetrac-git · 2022-11-06T00:36:22Z

Changed commit from 0dfa4b9 to 088b11a

mkoeppe · 2022-11-06T00:37:13Z

comment:7

[papilo-2.1.1] -- Could NOT find TBB (missing: TBB_DIR)
[papilo-2.1.1] -- Could NOT find TBB (missing: TBB_IMPORTED_TARGETS tbb tbbmalloc) (Required is at least version "2018")
[papilo-2.1.1] -- Downloading TBB

so we'll need to add tbb as a package

sagetrac-git · 2022-11-10T01:19:37Z

Branch pushed to git repo; I updated commit sha1. New commits:

`adb37b8`	`build/pkgs/papilo: Add dependency onetbb`

sagetrac-git · 2022-11-10T01:19:37Z

Changed commit from 088b11a to adb37b8

sagetrac-git · 2022-11-10T01:30:05Z

Changed commit from adb37b8 to 36abfb5

sagetrac-git · 2022-11-10T01:30:05Z

Branch pushed to git repo; I updated commit sha1. New commits:

`36abfb5`	`build/pkgs/onetbb: New`

sagetrac-git · 2022-11-10T02:14:29Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`b1e6d07`	`build/pkgs/onetbb: New`

sagetrac-git · 2022-11-10T02:14:29Z

Changed commit from 36abfb5 to b1e6d07

mkoeppe · 2022-11-13T19:31:20Z

Author: Matthias Koeppe

sagetrac-git · 2022-11-14T06:30:32Z

Branch pushed to git repo; I updated commit sha1. New commits:

`b56f82a`	`build/pkgs/onetbb/spkg-install.in: Do not treat compiler warnings as errors`

sagetrac-git · 2022-11-14T06:30:32Z

Changed commit from b1e6d07 to b56f82a

mkoeppe · 2022-11-14T07:51:38Z

comment:14

Our boost_cropped package does not provide program_options.
ubuntu-bionic-minimal: https://github.com/mkoeppe/PySCIPOpt/actions/runs/3457453303/jobs/5774142273

[papilo-2.1.1]   CMake Error at /sage/local/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
  [papilo-2.1.1]     Could NOT find Boost (missing: program_options) (found suitable version
  [papilo-2.1.1]     "1.66.0", minimum required is "1.65")

dimpase · 2022-11-14T11:01:56Z

comment:15

could it be due to out boost being over 5 years old? I'll check if we can update to 1.80 easily

dimpase · 2022-11-14T11:10:24Z

comment:16

see #34748 for boost update

dimpase · 2022-11-14T11:54:44Z

Dependencies: #34748

dimpase · 2022-11-14T11:54:44Z

comment:17

use updated boost_cropped

dimpase · 2022-11-14T14:08:29Z

Reviewer: Dima Pasechnik

sagetrac-git · 2022-11-18T22:58:11Z

Changed commit from 5a04fdc to f27de02

sagetrac-git · 2022-11-20T03:15:47Z

Changed commit from f27de02 to a52e72f

sagetrac-git · 2022-11-20T03:15:47Z

Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:

`a52e72f`	`build/pkgs/papilo: Patch out dependency on boost program_options, use PAPILO_NO_BINARIES=1`

mkoeppe · 2022-11-20T09:25:31Z

comment:30

build failure on fedora-37 - scipopt/papilo#23

mkoeppe · 2022-11-23T22:08:33Z

comment:31

build failure of onetbb on ubuntu-trusty-toolchain-gcc_9 https://github.com/mkoeppe/PySCIPOpt/actions/runs/3535481134/jobs/5933596249

2021.7.0/src/src/tbb/../../include/tbb/../oneapi/tbb/detail/_concurrent_skip_list.h:25,
                 from /sage/local/var/tmp/sage/build/onetbb-2021.7.0/src/src/tbb/../../include/tbb/../oneapi/tbb/concurrent_map.h:21,
                 from /sage/local/var/tmp/sage/build/onetbb-2021.7.0/src/src/tbb/../../include/tbb/concurrent_map.h:17,
                 from /sage/local/var/tmp/sage/build/onetbb-2021.7.0/src/test/tbb/test_concurrent_map.cpp:19:
/usr/include/c++/9/bits/basic_string.h: In instantiation of 'class std::basic_string<char, std::char_traits<char>, tbb::detail::d1::tbb_allocator<char> >':
/sage/local/var/tmp/sage/build/onetbb-2021.7.0/src/test/common/concurrent_associative_common.h:964:29:   required from 'void test_map_specific_types() [with Checker = OrderedMapTypesTester]'
/sage/local/var/tmp/sage/build/onetbb-2021.7.0/src/test/tbb/test_concurrent_map.cpp:90:52:   required from here
/usr/include/c++/9/bits/basic_string.h:3146:63: error: no class template named 'rebind' in 'class tbb::detail::d1::tbb_allocator<char>'
 3146 |       typedef typename _Alloc::template rebind<_CharT>::other _CharT_alloc_type;
      |                                                               ^~~~~~~~~~~~~~~~~
compilation terminated due to -Wfatal-errors.
make[5]: *** [test/CMakeFiles/test_concurrent_map.dir/tbb/test_concurrent_map.cpp.o] Error 1
make[5]: Target `test/CMakeFiles/test_concurrent_map.dir/build' not remade because of errors.
make[4]: *** [test/CMakeFiles/test_concurrent_map.dir/all] Error 2

mkoeppe · 2022-11-23T22:10:55Z

comment:32

That's oneapi-src/oneTBB#383

sagetrac-git · 2022-11-27T00:19:30Z

Changed commit from a52e72f to 3adc477

sagetrac-git · 2022-11-27T00:19:30Z

Branch pushed to git repo; I updated commit sha1. New commits:

`1f30f5c`	`Merge tag '9.8.beta4' into t/34726/optional_package_papilo__dependency_of_scip_`
`b62841d`	`build/pkgs/papilo/dependencies: Add gfortran`
`6e78b57`	`build/pkgs/papilo/spkg-install.in: Set BOOST_ROOT`
`3adc477`	`build/pkgs/onetbb/spkg-configure.m4: New`

mkoeppe · 2022-11-27T00:22:51Z

comment:34

build failures on ubuntu-trusty-toolchain-gcc_9 (comment:31) and fedora-37 (comment:30) remain, but that should not stop us from merging these optional packages. Both need help from upstream

sagetrac-git · 2022-11-27T23:12:29Z

Branch pushed to git repo; I updated commit sha1. New commits:

`45f957e`	`Revert "build/pkgs/boost_cropped/distros/debian.txt: Add libboost-program-options-dev"`

sagetrac-git · 2022-11-27T23:12:29Z

Changed commit from 3adc477 to 45f957e

sagetrac-git · 2022-12-09T02:32:58Z

Changed commit from 45f957e to d26090f

sagetrac-git · 2022-12-09T02:32:58Z

Branch pushed to git repo; I updated commit sha1. New commits:

`ebac2fd`	`build/pkgs/papilo/patches: Add https://github.com/scipopt/papilo/commit/e34cfbe0b6d6b4c6e8d5d9305046a00821c81828`
`d26090f`	`build/pkgs/papilo/patches/import_memory_multiprecision.patch: New, back out ineffective patch`

mkoeppe · 2022-12-09T02:37:31Z

comment:37

This fixed the build failure on fedora-37.

mkoeppe · 2022-12-09T17:55:16Z

comment:38

Ready for review

sagetrac-git · 2022-12-09T21:33:26Z

Branch pushed to git repo; I updated commit sha1. New commits:

`4b71c4a`	`build/pkgs/onetbb/distros/conda.txt: New`

sagetrac-git · 2022-12-09T21:33:26Z

Changed commit from d26090f to 4b71c4a

mkoeppe · 2022-12-11T20:51:35Z

comment:41

Thanks!

vbraun · 2023-01-01T23:43:36Z

Changed branch from u/mkoeppe/optional_package_papilo__dependency_of_scip_ to 4b71c4a

… cmake version to 3.11 scip (sagemath#31329) fails to build with the older cmake provided by ubuntu- xenial (scipopt/scip#32) papilo (sagemath#34726) needs at least cmake 3.11. 3.10.x is shipped on ubuntu-bionic, linuxmint-19. URL: https://trac.sagemath.org/34746 Reported by: mkoeppe Ticket author(s): Matthias Koeppe Reviewer(s): Dima Pasechnik

mkoeppe added this to the sage-9.8 milestone Nov 5, 2022

mkoeppe added c: packages: optional labels Nov 5, 2022

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mkoeppe added the s: needs review label Nov 13, 2022

mkoeppe added s: needs review and removed s: needs work labels Nov 27, 2022

dimpase added s: positive review and removed s: needs review labels Dec 11, 2022

vbraun removed the s: positive review label Jan 1, 2023

vbraun closed this as completed in f84915f Jan 1, 2023

dimpase mentioned this issue Dec 31, 2022

update boost-cropped to 1.82.0 #34748

Open

kryzar pushed a commit to kryzar/sage that referenced this issue Feb 6, 2023

Merge sagemath#34726

76667d4

kryzar pushed a commit to kryzar/sage that referenced this issue Feb 6, 2023

Merge sagemath#34726

931e348

kryzar pushed a commit to kryzar/sage that referenced this issue Feb 6, 2023

Merge sagemath#34726

805e67d

Optional package papilo (dependency of scip) #34726

Optional package papilo (dependency of scip) #34726

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