force log printing

smirarab · Nov 24, 2024 · 7421869 · 7421869
1 parent 287052b
commit 7421869
Showing 1 changed file with 1 addition and 2 deletions.
diff --git a/.github/workflows/sepp_tests.yml b/.github/workflows/sepp_tests.yml
@@ -42,8 +42,7 @@ jobs:
     #     nosetests -w test/unittest --with-doctest --with-coverage
     - name: functional test
       run: |
-        sepp-package/run-sepp.sh test/unittest/data/q2-fragment-insertion/input_fragments.fasta funcTest -x 2 -a test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta -t test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk -r test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info
-        cat *funcTest-err.log
+        sepp-package/run-sepp.sh test/unittest/data/q2-fragment-insertion/input_fragments.fasta funcTest -x 2 -a test/unittest/data/q2-fragment-insertion/reference_alignment_tiny.fasta -t test/unittest/data/q2-fragment-insertion/reference_phylogeny_tiny.nwk -r test/unittest/data/q2-fragment-insertion/RAxML_info-reference-gg-raxml-bl.info; cat *funcTest-err.log
         diff funcTest_placement.tog.relabelled.tre test/functionaltest/funcTest_q2-tiny_placement.tog.relabelled.tre
     # - name: convert coverage
     #   shell: bash -el {0}