Releases: superphy/spfy
6.3.1 More Descriptive VF Results
6.3.0 Changes per paper revisions
- new search function
- updates rgi to v4
- fixes to phylotyper integration
- fixes mongodb based spfyid index
- fixes persistance of vf/serotype display
- changes grouch's internal docker port (doesnt affect host)
Hotifxes
6.2.2 Phylotyper queries graph directly
CHANGE:
- Phylotyper no longer queries Blazegraph for results from ECTyper. Instead, the DNASequences are directly retrieved from the graph objects created in the pipeline. This is done because the phylotyper.sequences.sequence_query() was bottlenecking the pipeline.
6.2.1 Stability Improvements for Timing Jobs
Changes:
-Fixed handling of compressed files with the Pipeline class: changes in ra_post().
-Fixed storing of files uploaded in the Pipeline class: changes in ra_post().
-Fixes timing of multiple files: caches job timings as they are checked.
-Timings for Pipeline ids now return the file they are associated with.
-Store/Retrieve the index ('cache') of spfyids:genomehashes in MongoDB
-Store/Retrieve the largest spfyid in MongoDB
Notes:
-Should solve ~90% of the problems we were having with Blazegraph (#187)
-Will still have delays with retrieval for tasks like phylotyper or group comparisons
6.2.0 Unified Pipelines
Merging.
CHANGELOG:
New ECTyper for Serotype
Phylotyper jobs displayed together with other subtyping
VF dep for phylotyper is hidden from user
Unified pipeline system
TODO:
Error handling is pretty wonky
Fix tests
Fixes to reactapp
Merge pull request #270 from superphy/6.1.1 UPDATE: reactapp to 6.1.1
Bearer based accounts
Merge pull request #267 from superphy/bearer MERGE: 6.1.0 bearer accounts
User Accounts
v6.0.0 UPDATE: reactapp submodule