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Refactor skeleton.to_json to serialize skeleton object without jsonpickle #1934

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Refactor skeleton.to_json to serialize skeleton object without jsonpickle #1934

wants to merge 20 commits into from

Commits on Sep 3, 2024

  1. comment in to_json to start

    @eberrigan
    eberrigan committed Sep 3, 2024
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  2. fix confusing typo

    @eberrigan
    eberrigan committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. add logic from sleap-io serialize_skeletons to Skeleton.to_json a… 

    …nd use `json.dumps` instead of `jsonpickle`
    @eberrigan
    eberrigan committed Sep 4, 2024
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  2. clean docstring

    @eberrigan
    eberrigan committed Sep 4, 2024
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  3. replace relabel nodes logic using networkx with custom indexing logic

    @eberrigan
    eberrigan committed Sep 4, 2024
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  4. make dictionary directly instead of a list with a dictionary and save… 

    … json string
    @eberrigan
    eberrigan committed Sep 4, 2024
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Commits on Sep 5, 2024

  1. no attributes edge.source and edge.destination in SLEAP

    @eberrigan
    eberrigan committed Sep 5, 2024
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Commits on Sep 10, 2024

  1. Merge branch 'develop' into elizabeth/refactor-skeletons-serialization

    @eberrigan
    eberrigan committed Sep 10, 2024
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  2. add to_json functions using sleap-io logic

    @eberrigan
    eberrigan committed Sep 10, 2024
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Commits on Sep 11, 2024

  1. save changes to serialize skeletons

    @eberrigan
    eberrigan committed Sep 11, 2024
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  2. match everything except indexing to legacy sleap

    @eberrigan
    eberrigan committed Sep 11, 2024
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Commits on Sep 12, 2024

  1. Merge branch 'develop' into elizabeth/refactor-skeletons-serialization

    @eberrigan
    eberrigan committed Sep 12, 2024
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Commits on Sep 13, 2024

  1. move nodes list before links

    @eberrigan
    eberrigan committed Sep 13, 2024
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  2. format

    @eberrigan
    eberrigan committed Sep 13, 2024
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  3. symmetry is a tuple of nodes

    @eberrigan
    eberrigan committed Sep 13, 2024
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  4. source and target should be tuples in edge dict

    @eberrigan
    eberrigan committed Sep 13, 2024
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Commits on Sep 17, 2024

  1. check-in notebook for testing

    @eberrigan
    eberrigan committed Sep 17, 2024
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  2. refer to source and target nodes using "py/id"

    @eberrigan
    eberrigan committed Sep 17, 2024
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  3. use source and target nodes to index

    @eberrigan
    eberrigan committed Sep 17, 2024
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  4. use tuple format for Node

    @eberrigan
    eberrigan committed Sep 17, 2024
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