Pin ndx-pose<0.2.0 #1978
Pin ndx-pose<0.2.0 #1978
Conversation
WalkthroughThe changes primarily focus on updating version constraints for the Changes
Sequence Diagram(s)sequenceDiagram
participant User
participant Environment
participant PackageManager
User->>Environment: Request to set up environment
Environment->>PackageManager: Check dependencies
PackageManager->>PackageManager: Validate version constraints
PackageManager-->>Environment: Confirm valid setup
Environment-->>User: Environment ready
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🚧 Files skipped from review as they are similar to previous changes (1)
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (8)
environment_mac.yml (1)
42-42: Approved: Version constraint for 'ndx-pose' correctly implemented.The addition of
- conda-forge::ndx-pose <0.2.0aligns with the PR objectives to pin the 'ndx-pose' package to a version lower than 0.2.0. This change will prevent potential compatibility issues with breaking API changes in newer versions.For improved clarity, consider adding a comment explaining the reason for this version constraint. For example:
# Pin ndx-pose to <0.2.0 due to compatibility issues with breaking API changes in newer versions - conda-forge::ndx-pose <0.2.0This will help future maintainers understand the rationale behind this specific version constraint.
environment_no_cuda.yml (1)
44-44: LGTM! Consider adding a comment explaining the version constraint.The addition of the version constraint for
ndx-poseis correct and aligns with the PR objectives. This change effectively pins the package to versions lower than 0.2.0, which should help avoid compatibility issues with breaking API changes.Consider adding a brief comment explaining why this version constraint is necessary. This will help future maintainers understand the reasoning behind this specific version pinning. For example:
# Pin ndx-pose to <0.2.0 due to compatibility issues with breaking API changes - conda-forge::ndx-pose <0.2.0pypi_requirements.txt (2)
Line range hint
52-55: LGTM: Additional dependency constraints added for compatibility.The added constraints for
urllib3andprotobufare good additions to ensure compatibility with other dependencies and to make the GUI work in Windows.Consider adding these constraints to the project's documentation or a separate
DEPENDENCIES.mdfile to explain why these specific versions are required. This will help future maintainers understand the reasoning behind these constraints.🧰 Tools
🪛 LanguageTool
[grammar] ~41-~41: Did you mean the proper noun “Apple Silicon”?
Context: ...ested since we do not offer a wheel for apple silicon atm. tensorflow-macos==2.9.2; sys_platf...(APPLE_PRODUCTS)
Line range hint
1-55: Overall, the changes look good and address the PR objective.The main goal of pinning
ndx-pose<0.2.0has been achieved, and additional dependency constraints have been added to improve compatibility and functionality across different platforms. These changes should help maintain a stable development environment.To further improve dependency management:
- Consider using a tool like
pip-compileto generate and maintain arequirements.lockfile. This would ensure reproducible builds across different environments.- Regularly review and update dependencies to stay current with security patches and new features.
- Set up automated dependency checking (e.g., with Dependabot) to be notified of new versions and potential security vulnerabilities.
🧰 Tools
🪛 LanguageTool
[grammar] ~41-~41: Did you mean the proper noun “Apple Silicon”?
Context: ...ested since we do not offer a wheel for apple silicon atm. tensorflow-macos==2.9.2; sys_platf...(APPLE_PRODUCTS)
environment.yml (2)
43-43: Approved: Version constraint for ndx-pose added as intended.The addition of
- conda-forge::ndx-pose <0.2.0aligns with the PR objective to pin thendx-posepackage to a version lower than 0.2.0. This change will help prevent potential compatibility issues with newer versions.Consider adding a comment explaining why this version constraint is necessary. This will help future maintainers understand the reasoning behind this decision.
40-40: Approved: TensorFlow version pinned with a note for future update.The specification of
sleap/label/dev::tensorflow ==2.7.0with the TODO comment is a good temporary solution. It ensures a specific version is used while acknowledging the need for a future update.To ensure the TODO is not forgotten, would you like me to create a GitHub issue to track the task of updating TensorFlow to the main label when it's ready?
.conda_mac/meta.yaml (1)
60-60: Fix formatting and approve version constraint.The version constraint for
ndx-posehas been correctly added as per the PR objective. However, there's a minor formatting issue:Please apply this change to fix the formatting:
- - conda-forge:: <0.2.0 + - conda-forge::ndx-pose <0.2.0.conda/meta.yaml (1)
58-58: Summary: ndx-pose version constraint successfully implementedThe changes in this file successfully implement the version constraint for ndx-pose (
<0.2.0) in both the host and run environments. This addresses the PR objective of pinning the ndx-pose package version until compatibility issues with breaking API changes can be resolved.The modifications are minimal and focused, maintaining consistency across the package lifecycle without affecting other dependencies. This approach should effectively prevent potential issues arising from incompatible ndx-pose versions.
Consider documenting this temporary version constraint in a prominent location (e.g., README or CHANGELOG) to ensure it's not overlooked in future updates. Also, create an issue to track the resolution of the compatibility problems with ndx-pose 0.2.0+, ensuring this constraint can be removed once those issues are addressed.
Also applies to: 93-93
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (6)
- .conda/meta.yaml (2 hunks)
- .conda_mac/meta.yaml (2 hunks)
- environment.yml (1 hunks)
- environment_mac.yml (1 hunks)
- environment_no_cuda.yml (1 hunks)
- pypi_requirements.txt (1 hunks)
🔇 Additional comments (5)
pypi_requirements.txt (1)
40-40: LGTM: Version constraint forndx-poseadded as intended.This change aligns with the PR objective to pin
ndx-poseto a version lower than 0.2.0, which should prevent compatibility issues with breaking API changes in newer versions.To ensure this change doesn't introduce any unintended consequences, please run the following script to check for any usage of
ndx-posefeatures that might be affected by this version constraint:✅ Verification successful
Verification Successful: Usage of
ndx-poseConfirmed.The
ndx-posedependency is used in the following files:
sleap/io/dataset.pysleap/io/format/ndx_pose.pyThe version constraint
ndx-pose<0.2.0ensures compatibility with the current usage, preventing potential issues from newer versions.🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Check for usage of ndx-pose features that might be affected by the version constraint # Search for imports and usage of ndx-pose rg --type python -e "from ndx_pose" -e "import ndx_pose" -e "ndx_pose\." -C 5Length of output: 110
Script:
#!/bin/bash # Description: Check for usage of ndx-pose features that might be affected by the version constraint # Search for imports and usage of ndx-pose using file globbing for Python files rg -g "*.py" -e "from ndx_pose" -e "import ndx_pose" -e "ndx_pose\." -C 5Length of output: 3875
.conda_mac/meta.yaml (2)
92-92: LGTM: Version constraint correctly added.The version constraint for
ndx-posehas been correctly added in therequirements.runsection, consistent with the PR objective and the change in therequirements.hostsection.
60-60: Summary: Consistent version pinning for ndx-poseThe changes in both
requirements.hostandrequirements.runsections consistently pin thendx-posepackage to versions below 0.2.0. This ensures that the version constraint is applied during both build and runtime, which aligns well with the PR objective.These changes effectively address the compatibility issues mentioned in the PR description until they can be resolved.
Also applies to: 92-92
.conda/meta.yaml (2)
93-93: LGTM: ndx-pose version constraint added to run environmentThe addition of
conda-forge::ndx-pose <0.2.0to the run requirements is consistent with the change in the host environment. This ensures that the version constraint is applied both during build and runtime.Let's verify if this constraint is applied consistently across all relevant configuration files:
#!/bin/bash # Description: Check for consistency of ndx-pose constraint across configuration files # Test: Search for ndx-pose specifications in all yaml files rg --type yaml 'ndx-pose' # Test: Search for ndx-pose specifications in all requirements files rg 'ndx-pose' *requirements*.txt # Test: Search for ndx-pose specifications in setup.py rg 'ndx-pose' setup.py
58-58: LGTM: ndx-pose version constraint added to host environmentThe addition of
conda-forge::ndx-pose <0.2.0to the host requirements aligns with the PR objective to pin the ndx-pose package version. This constraint ensures compatibility during the build process.Let's verify if this constraint is consistent with other dependencies:
✅ Verification successful
Verified:
ndx-poseversion constraint is consistently applied across all dependenciesThe constraint
conda-forge::ndx-pose <0.2.0is uniformly specified in all relevant environment and requirements files, ensuring compatibility and preventing conflicts.🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Description: Check for any conflicts with the new ndx-pose constraint # Test: Search for any other ndx-pose specifications rg --type yaml 'ndx-pose' .conda/meta.yaml # Test: Check if there are any other dependencies that might be affected by this change rg --type yaml 'pose' .conda/meta.yamlLength of output: 457
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## develop #1978 +/- ##
===========================================
+ Coverage 73.30% 75.48% +2.17%
===========================================
Files 134 133 -1
Lines 24087 24625 +538
===========================================
+ Hits 17658 18587 +929
+ Misses 6429 6038 -391 ☔ View full report in Codecov by Sentry. |
Description
Pin
ndx-pose<0.2.0until we fix compatibility with breaking API changes.Types of changes
Does this address any currently open issues?
[list open issues here]
Outside contributors checklist
Thank you for contributing to SLEAP!
❤️
Summary by CodeRabbit
New Features
ndx-posepackage across various configuration files to ensure compatibility with versions below0.2.0.tensorflowto==2.7.0for improved stability.tensorflow-macosandtensorflow-metal.Bug Fixes
Chores