Drug Resistance Prediction with Reference Graphs
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Aug 9, 2023 - Rust
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drug-resistance-prediction
Here are 10 public repositories matching this topic...
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
bioinformatics nanopore genomics variant-calling mycobacterium-tuberculosis drug-resistance-prediction
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Jun 12, 2024 - Python
The implementation of Long-term Recurrent Convolutional Network (LRCN), wide-n-deep NN, LSTM, SVM, LR, RF for drug resistance prediction.
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Sep 27, 2021 - Python
My PhD thesis
bioinformatics phd-thesis tuberculosis bacterial-genomes nanopore-sequencing basecalling drug-resistance-prediction genome-graphs transmission-clustering
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Feb 14, 2022 - Jupyter Notebook
The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.
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Sep 27, 2021
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Nov 28, 2020 - Jupyter Notebook
Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations
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Feb 23, 2024 - Python
Multi-class classification of drug resistance in MTB clinical isolates
machine-learning svm prediction vcf diagnostics shell-script caret variant-calling samtools bwa-mem r-programming whole-genome-sequencing trimgalore multi-class-classification freebayes mycobacterium-tuberculosis drug-resistance-prediction
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Jan 30, 2024 - Shell
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
bioinformatics nanopore genomics slides variant-calling tuberculosis drug-resistance-prediction transmission-clustering
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Feb 24, 2022 - JavaScript
Multi-class classification of drug resistance in MTB clinical isolates
machine-learning r vcf shell-script caret variant-calling samtools bwa-mem whole-genome-sequencing multiclass-classification trimgalore multilayer-perceptron freebayes explainable-ai shap mycobacterium-tuberculosis dalex drug-resistance-prediction
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May 21, 2024 - Shell
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