Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

vSNP -- validate SNPs

A nextflow pipeline for polishing CLR assemblies

a better freebayes-parallel

vSNP -- validate SNPs

A workflow for using SpeedSeq to align and call SVs from WGS data

This directory contains material that I've used in different courses

Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

Short read mapping and variant calling

Multi-class classification of drug resistance in MTB clinical isolates

Nextflow resequencing pipeline with bwa-mem and freebayes

BSA-QTL Mapping in Drosophila Ananassae

Multi-class classification of drug resistance in MTB clinical isolates