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enhancer-prediction

Here are 7 public repositories matching this topic...

yupenghe / REPTILE

Predicting regulatory DNA elements based on epigenomic signatures

bioinformatics dna-methylation bioinformatics-algorithms epigenomics enhancer-prediction

Updated Jun 26, 2024
Python

EngreitzLab / gene_network_evaluation

Evaluation framework for computationally inferred gene networks from single-cell data.

single-cell-genomics enhancer-prediction gene-regulatory-network gene-co-expression-network

Updated Oct 22, 2024
Jupyter Notebook

Danko-Lab / tfTarget

Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data

transcriptional-regulatory-network enhancer-prediction pro-seq chro-seq

Updated Aug 27, 2022
R

iatahmid / chilenpred

hilbert-curve sequence-analysis cnn-classification enhancer-prediction

Updated Jan 28, 2019
Jupyter Notebook

epiRomics

Huising-Lab / epiRomics

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis

Updated Nov 18, 2023
HTML

slrvv / CENTRE

machine-learning computational-biology r-package enhancer-prediction xgboost-classifier enhancer-gene

Updated Nov 8, 2024
R

psaisan / PEAKDIFF

Differential peak analysis, genomic sequences associated with distinct experimental conditions

bioinformatics homer enhancer-prediction chipseq peak-analysis deseq2-analysis

Updated Nov 9, 2024
Jupyter Notebook

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