zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
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Jul 12, 2024 - R
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fastq
Here are 11 public repositories matching this topic...
Access and Format Single-cell RNA-seq Datasets from Public Resources
geo bam fastq zenodo sra single-cell-rna-seq format-conversion-tool human-cell-atlas cellxgene panglaodb ucsc-cell-browser
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Dec 12, 2024 - R
The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, clusters reads and produces a consensus sequence for each cluster after multiple sequence alignment.
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Feb 27, 2019 - R
Quickly download fastq files associated with a GEO series
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Oct 8, 2021 - R
Advanced Rmarkdown templates for generating NGS reports
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Nov 24, 2020 - R
Pipeline for low-level RNA-Seq data processing
r pipeline bacterial-transcription transcriptome transcriptomics fastq rsem rna-seq-pipeline rna-sec
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Oct 4, 2016 - R
Genome Analysis Toolkit
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Dec 13, 2018 - R
Sequencing data preprocessing
mapping ngs sequencing entrez bigwig chip-seq peak-caller wiggle galaxy-project fastq bedtools ncbi samtools sra ucsc-browser bowtie2 chip-seq-pipelines galaxy-server macs2 bedfile
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Jun 18, 2018 - R
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