A declarative interactive genomics visualization library for Python.
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …
Python API and Jupyter widget for Vitessce
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
A utility script to manage local docker instances of HiGlass
Server component for HiGlass that manages and serves tiled data
Given a Frictionless Table Schema, generate an Excel template with input validation
Utils for loading HuBMAP data formats
Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)
Creates a Docker image that can create tiles from OME-TIFF files
Given HuBMAP Dataset JSON, creates a Vitessce configuration
Docker containers to pre-process data for visualization in the portal
Python utility for converting images to zarr chunked arrays
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