Genomic interval operations on Pandas DataFrames

Publication quality NGS track plotting

WisecondorX — An evolved WISECONDOR

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

HemTools: a collection of NGS pipelines and bioinformatic analyses

Project Manager for NGS data analysis

TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy

Flexible analysis of high-content CRISPR screening

Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

群体遗传学分析中用到的script和skill等

A toolkit for NGS analysis with Python

The ChIP-Seq peak calling algorithm using convolution neural networks

A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

Protein Analysis and Classifier Toolkit

SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

Cobalt is a tool to detect copy-number variants from next generation sequencing (NGS) data

Tools for analyzing NGS sequence data and aligned protein sequences

ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

NGS data analysis scripts for HBV elimination research group