showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.

A suite of tools to build and search generalized profiles

🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

An automated method to map yeast variants to proteins modifications and functional regions

SWift and Optimized Recognition of protein Domains

Estimate PTM hotspots in protein sequence alignments

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.

Refining Domain Boundaries and Performing Large Scale Parsing

Comparison of protein learning

FAS - Tool for Feature Architecture Similarity calculation

A Bio2BEL package for converting InterPro to BEL

UniParc dataset describing ~300 million protein sequences converted into relational tables accessible through Google BigQuery (and as Parquet files).

protein domain prediction

HMM protein domain prediction

Mapping domain co-occurrence networks with emphasis on c-d-GMP binding domains.

Brivez is a bioinformatic tool thought as Quality of Life's improvement, providing high quantity of data in a snap, giving you a quick view on what you could find inside your transcriptome/sequences' list.

Profile hidden Markov model (HMM) to identify the Kunitz domain in protein sequences, using MSA-guided training and optimization.

👐 TADOSS: TAndem DOmain Swap Stability predictor

Using BLAST and Transdecoder.