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INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Simplified model of mTOR written using PySB. mTOR is modeled such that its activation is due to insulin receptor activation, and inhibited by binding of rapamycin-FKBP complex.