Analyse Nucleic Acids Structure and Simulations with baRNAba

nucleic acid folding

Python implementation of Nussinov RNA folding algorithm and recursive backtrack.

RNA Pseudoknotted Secondary Structure Prediction Using Strict Hierarchical Folding

RNA Pseudoknotted Secondary Structure Prediction Using Relaxed Hierarchical Folding

RNA/DNA/PMO Pseudoknotted Secondary Structure Interaction Prediction Using Relaxed Hierarchical Folding

🧬 Zuker: An RNA secondary structure prediction algorithm

MFE method for predicting the psuedoknotted secondary structures of RNA sequences.

Tools For Computational Biology

Faster algorithms for RNA-folding using the Four-Russians method

Julia interface to ViennaRNA for RNA structure prediction and analysis

Julia interface to the RNAstructure program suite for RNA structure prediction and analysis

RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform

RNA folding project in C++

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

This demo program takes an RNA sequence and applies a quadratic model in pursuit of the optimal stem configuration.

Implementation and visualization of dynamic programming based RNA secondary structure approximation

This is a dynamic programming implementation with an SDL visualization of conversion from mRNA to most optimal secondary structure (most number of base pairs).