Updating CI env with 2022.02 accessclinicaldata.niaid.nih.gov 1645648313

[PlanXCyborg]

Applying version 2022.02 to accessclinicaldata.niaid.nih.gov

[PlanXCyborg]

accessclinicaldata.niaid.nih.gov/manifest.json

Deployment changes

• hatchery
  • Add pay-models-dynamodb-table to the Hatchery configuration file to fetch pay model data from DynamoDB (PR fix(dataguids.org): add manifest.json #35) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to change the user field name to user_id (PR fix(dataguids.org): add manifest.json #35) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Add gen3-volume-location to the Hatchery configuration file for each container to overwrite the directory that API key will be saved to (PR fix(account): portal to master #33) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to add option ecs for enabling ECS decoupled workspace (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to add option subnet for setup transit gateway subnet addresses (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Add pay-models-dynamodb-table to the Hatchery configuration file to fetch pay model data from DynamoDB (PXP-8341 Fetch pay models from DynamoDB hatchery#35)
  • Update the Hatchery configuration file pay-models block to change the user field name to user_id (PXP-8341 Fetch pay models from DynamoDB hatchery#35)
• indexd
  • Include example secrets to load PostgreSQL settings for indexd (Add files for psql ssl support indexd#317)
• metadata
  • A job has been created to make aggregate MDS population more robust feat(agg-mds-job): add new agg mds job cloud-automation#1722 (feat(populate): improved populate script, docs metadata-service#33)
  • Must set the appropriate AGG_MDS_NAMESPACE value in metadata.env (Feat/mds adapter metadata-service#29)
  • Per chore(metadata): migrate agg MDS configs #3332 a metadata/aggregate_config.json file should be created as part of the manifest config for a commons and the appropriate environment vars for metadata should be defined in the manifest JSON (chore(configs): remove configs from source control metadata-service#30)
  • The new command to populate an aggregate MDS is kubectl exec $(gen3 pod metadata) -- python /src/src/mds/populate.py --config /aggregate_config.json --hostname esproxy-service --port 9200 (chore(configs): remove configs from source control metadata-service#30)
• requestor
  • This Requestor update requires Arborist 3.2.0/2021.12 or more recent (PXP-9128 Flexible permissions: grant/revoke access to policies requestor#24)
  • Requestor database migration to version 42cbae986650 (should happen automatically in cloud-automation deployments) (PXP-9128 Flexible permissions: grant/revoke access to policies requestor#24)
• ssjdispatcher
  • PS: This is follow-up on this one: Kids First ETL Mapping #39 ([PXP-8943] [PXP-8859] Feat/update go 1.17 ssjdispatcher#40)

[PlanXCyborg]

accessclinicaldata.niaid.nih.gov/manifest.json

Deployment changes

• hatchery
  • Add pay-models-dynamodb-table to the Hatchery configuration file to fetch pay model data from DynamoDB (PR fix(dataguids.org): add manifest.json #35) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to change the user field name to user_id (PR fix(dataguids.org): add manifest.json #35) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Add gen3-volume-location to the Hatchery configuration file for each container to overwrite the directory that API key will be saved to (PR fix(account): portal to master #33) (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to add option ecs for enabling ECS decoupled workspace (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Update the Hatchery configuration file pay-models block to add option subnet for setup transit gateway subnet addresses (PXP-8779 HP-347 Feat/ecs hatchery#38)
  • Add pay-models-dynamodb-table to the Hatchery configuration file to fetch pay model data from DynamoDB (PXP-8341 Fetch pay models from DynamoDB hatchery#35)
  • Update the Hatchery configuration file pay-models block to change the user field name to user_id (PXP-8341 Fetch pay models from DynamoDB hatchery#35)
• indexd
  • Include example secrets to load PostgreSQL settings for indexd (Add files for psql ssl support indexd#317)
• metadata
  • A job has been created to make aggregate MDS population more robust feat(agg-mds-job): add new agg mds job cloud-automation#1722 (feat(populate): improved populate script, docs metadata-service#33)
  • Must set the appropriate AGG_MDS_NAMESPACE value in metadata.env (Feat/mds adapter metadata-service#29)
  • Per chore(metadata): migrate agg MDS configs #3332 a metadata/aggregate_config.json file should be created as part of the manifest config for a commons and the appropriate environment vars for metadata should be defined in the manifest JSON (chore(configs): remove configs from source control metadata-service#30)
  • The new command to populate an aggregate MDS is kubectl exec $(gen3 pod metadata) -- python /src/src/mds/populate.py --config /aggregate_config.json --hostname esproxy-service --port 9200 (chore(configs): remove configs from source control metadata-service#30)
• requestor
  • This Requestor update requires Arborist 3.2.0/2021.12 or more recent (PXP-9128 Flexible permissions: grant/revoke access to policies requestor#24)
  • Requestor database migration to version 42cbae986650 (should happen automatically in cloud-automation deployments) (PXP-9128 Flexible permissions: grant/revoke access to policies requestor#24)
• ssjdispatcher
  • PS: This is follow-up on this one: Kids First ETL Mapping #39 ([PXP-8943] [PXP-8859] Feat/update go 1.17 ssjdispatcher#40)