Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

feat: switching to clinvar-data-jsonl for clinvar-minimal (#202) #203

Conversation

holtgrewe
Copy link
Contributor

No description provided.

@holtgrewe holtgrewe linked an issue Sep 11, 2023 that may be closed by this pull request
@codecov
Copy link

codecov bot commented Sep 11, 2023

Codecov Report

Patch coverage: 60.18% and project coverage change: -0.42% ⚠️

Comparison is base (9b1df8a) 73.52% compared to head (5a8e484) 73.10%.
Report is 5 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #203      +/-   ##
==========================================
- Coverage   73.52%   73.10%   -0.42%     
==========================================
  Files          57       57              
  Lines        5227     5262      +35     
==========================================
+ Hits         3843     3847       +4     
- Misses       1384     1415      +31     
Files Changed Coverage Δ
src/server/mod.rs 0.00% <0.00%> (ø)
src/clinvar_minimal/cli/reading.rs 36.00% <34.37%> (-19.56%) ⬇️
src/clinvar_minimal/cli/import.rs 94.44% <100.00%> (-0.30%) ⬇️
src/freqs/cli/import/reading.rs 86.17% <100.00%> (ø)
src/gnomad_nuclear/cli/import.rs 89.17% <100.00%> (ø)
src/gnomad_pbs/gnomad2.rs 93.80% <100.00%> (ø)
src/gnomad_pbs/gnomad3.rs 92.61% <100.00%> (ø)
src/gnomad_pbs/mtdna.rs 96.29% <100.00%> (ø)

... and 1 file with indirect coverage changes

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@holtgrewe holtgrewe merged commit 0e17128 into main Sep 11, 2023
7 of 9 checks passed
@holtgrewe holtgrewe deleted the 202-add-support-for-extended-clinvar-data-from-clinvar-data-jsonl branch September 11, 2023 09:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

Add support for extended clinvar data from clinvar-data-jsonl
1 participant