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feat: adding support for clinvar-sv data (#227) (#290) #144

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feat: adding support for clinvar-sv data (#227) (#290)

feat: adding support for clinvar-sv data (#227) (#290) #144

GitHub Actions / clippy succeeded Nov 16, 2023 in 1s

clippy

6 warnings

Details

Results

Message level Amount
Internal compiler error 0
Error 0
Warning 6
Note 0
Help 0

Versions

  • rustc 1.73.0 (cc66ad468 2023-10-03)
  • cargo 1.73.0 (9c4383fb5 2023-08-26)
  • clippy 0.1.73 (cc66ad4 2023-10-03)

Annotations

Check warning on line 342 in src/clinvar_sv/cli/query.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

this expression creates a reference which is immediately dereferenced by the compiler 

warning: this expression creates a reference which is immediately dereferenced by the compiler
   --> src/clinvar_sv/cli/query.rs:342:60
    |
342 |             print_record(&mut out_writer, args.out_format, &record)?;
    |                                                            ^^^^^^^ help: change this to: `record`
    |
    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow

Check warning on line 339 in src/clinvar_sv/cli/query.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

this expression creates a reference which is immediately dereferenced by the compiler 

warning: this expression creates a reference which is immediately dereferenced by the compiler
   --> src/clinvar_sv/cli/query.rs:339:20
    |
339 |             .query(&range)
    |                    ^^^^^^ help: change this to: `range`
    |
    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow

Check warning on line 279 in src/clinvar_sv/cli/query.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

this expression creates a reference which is immediately dereferenced by the compiler 

warning: this expression creates a reference which is immediately dereferenced by the compiler
   --> src/clinvar_sv/cli/query.rs:279:48
    |
279 |         let contig = extract_chrom::from_range(&range, Some(&self.meta.genome_release))?;
    |                                                ^^^^^^ help: change this to: `range`
    |
    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow

Check warning on line 50 in src/clinvar_sv/cli/import.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

the borrowed expression implements the required traits 

warning: the borrowed expression implements the required traits
  --> src/clinvar_sv/cli/import.rs:50:38
   |
50 |         Box::new(std::fs::File::open(&path_in_jsonl)?)
   |                                      ^^^^^^^^^^^^^^ help: change this to: `path_in_jsonl`
   |
   = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow

Check warning on line 47 in src/clinvar_sv/cli/import.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

the borrowed expression implements the required traits 

warning: the borrowed expression implements the required traits
  --> src/clinvar_sv/cli/import.rs:47:13
   |
47 |             &path_in_jsonl,
   |             ^^^^^^^^^^^^^^ help: change this to: `path_in_jsonl`
   |
   = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
   = note: `#[warn(clippy::needless_borrow)]` on by default

Check warning on line 223 in src/clinvar_sv/cli/query.rs

See this annotation in the file changed.

@github-actions github-actions / clippy

redundant field names in struct initialization 

warning: redundant field names in struct initialization
   --> src/clinvar_sv/cli/query.rs:223:13
    |
223 |             meta: meta,
    |             ^^^^^^^^^^ help: replace it with: `meta`
    |
    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#redundant_field_names
    = note: `#[warn(clippy::redundant_field_names)]` on by default
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