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varfish-org · Jul 25, 2024 · 33b31ab · 33b31ab
1 parent 29c3e64
commit 33b31ab
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Showing 2 changed files with 11 additions and 11 deletions.
diff --git a/src/mapper/variant.rs b/src/mapper/variant.rs
@@ -705,15 +705,15 @@ impl Mapper {
                 var_c.clone()
             };
 
-            // Handle case of variant location being 3' UTR (e.g., ins/dup beyond stop codon).
-            // Here, we can simply return "p.?".
-            if var_c.get_variant_location() == VariantLocation::ThreePrimeUtr {
-                return Ok(HgvsVariant::ProtVariant {
-                    gene_symbol: self.fetch_gene_symbol(accession.deref().as_str(), gene_symbol)?,
-                    accession: accession.clone(),
-                    loc_edit: ProtLocEdit::NoProteinUncertain,
-                });
-            }
+            // // Handle case of variant location being 3' UTR (e.g., ins/dup beyond stop codon).
+            // // Here, we can simply return "p.?".
+            // if var_c.get_variant_location() == VariantLocation::ThreePrimeUtr {
+            //     return Ok(HgvsVariant::ProtVariant {
+            //         gene_symbol: self.fetch_gene_symbol(accession.deref().as_str(), gene_symbol)?,
+            //         accession: accession.clone(),
+            //         loc_edit: ProtLocEdit::Unknown,
+            //     });
+            // }
 
             let reference_data = ref_transcript_data_cached(
                 self.provider.clone(),

diff --git a/tests/data/seqrepo_cache.fasta b/tests/data/seqrepo_cache.fasta