fail early, fail often

varfish-org · Nov 20, 2024 · 19ee33e · 19ee33e
1 parent aafa74b
commit 19ee33e
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -51,6 +51,12 @@ jobs:
           sysctl kernel.apparmor_restrict_unprivileged_unconfined \
                       kernel.apparmor_restrict_unprivileged_userns \
                       kernel.unprivileged_userns_clone
+          imgdir=/github/workspace/mehari-data-tx-workflow/.snakemake/singularity
+          mkdir -p $imgdir
+          pushd $imgdir
+          singularity pull --name bc40b59cbb87acb3ff98d1dbdc12639e.simg docker://ghcr.io/varfish-org/mehari:pr-603
+          popd
+          singularity exec --home '/github/workspace/mehari-data-tx-workflow' -B /github/workspace/snakemake_cache:/github/workspace/snakemake_cache:rw /github/workspace/mehari-data-tx-workflow/.snakemake/singularity/bc40b59cbb87acb3ff98d1dbdc12639e.simg bash -c 'set -euo pipefail; mehari --help'
 
       - name: Cache data directory
         id: cache-mehari-data-tx