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  1. ctwas ctwas Public

    package for the causal TWAS project

    R 38 12

  2. GSFA GSFA Public

    R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

    C++ 19 2

  3. lab-wiki lab-wiki Public

    Repository for documenting lab best practices

    Jupyter Notebook 4 2

  4. aFib_heart_atlas_mapgen_paper aFib_heart_atlas_mapgen_paper Public

    Code and data resources for aFib heart atlas paper

    R 4

  5. ctwas-paper ctwas-paper Public

    Code related to analysis in the ctwas paper.

    HTML 4

  6. mapgen mapgen Public

    R package to perform gene mapping using functionally-informed genetic fine mapping

    R 3 2

Repositories

Showing 10 of 17 repositories
  • multigroup_ctwas Public Forked from xinhe-lab/ctwas

    multigroup version of cTWAS package

    xinhe-lab/multigroup_ctwas’s past year of commit activity
    R 2 12 0 0 Updated Oct 31, 2024
  • ctwas Public

    package for the causal TWAS project

    xinhe-lab/ctwas’s past year of commit activity
    R 38 MIT 12 9 0 Updated Oct 31, 2024
  • mirage Public

    Mixture model based Rare variant Analysis on Genes

    xinhe-lab/mirage’s past year of commit activity
    HTML 2 2 3 0 Updated Sep 19, 2024
  • mapgen Public

    R package to perform gene mapping using functionally-informed genetic fine mapping

    xinhe-lab/mapgen’s past year of commit activity
    R 3 2 1 0 Updated Aug 13, 2024
  • singlegroup_ctwas Public Forked from xinhe-lab/ctwas

    package for the causal TWAS project

    xinhe-lab/singlegroup_ctwas’s past year of commit activity
    R 0 12 0 0 Updated Aug 13, 2024
  • ctwas-paper Public

    Code related to analysis in the ctwas paper.

    xinhe-lab/ctwas-paper’s past year of commit activity
    HTML 4 0 1 0 Updated Jan 20, 2024
  • GSFA Public

    R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

    xinhe-lab/GSFA’s past year of commit activity
    C++ 19 MIT 2 5 1 Updated Oct 3, 2023
  • GSFA_paper Public

    Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"

    xinhe-lab/GSFA_paper’s past year of commit activity
    R 2 2 1 0 Updated Sep 26, 2023
  • aFib_heart_atlas_mapgen_paper Public

    Code and data resources for aFib heart atlas paper

    xinhe-lab/aFib_heart_atlas_mapgen_paper’s past year of commit activity
    R 4 0 0 0 Updated Jun 24, 2023
  • heart_atlas Public Forked from aselewa/heart_atlas

    heart atlas analysis in R

    xinhe-lab/heart_atlas’s past year of commit activity
    R 0 5 0 0 Updated May 19, 2022
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