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Give UUID to artifact interval #993

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merged 12 commits into from
Jun 18, 2024
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Commits on May 31, 2024

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Commits on Jun 3, 2024

  1. Add ability to set smoothing sigma in get_firing_rate (LorenFrankLab#994

    )
    
    * add option to set spike smoothing sigma
    
    * update changelog
    samuelbray32 authored Jun 3, 2024
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Commits on Jun 4, 2024

  1. Add docstrings to SortedSpikesGroup and Decoding methods (LorenFrankL…

    …ab#996)
    
    * Add docstrings
    
    * update changelog
    
    * fix spelling
    
    ---------
    
    Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsfmedicalcenter.org>
    samuelbray32 and Samuel Bray authored Jun 4, 2024
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  2. Add Common Errors doc (LorenFrankLab#997)

    * Add Common Errors
    
    * Update changelog
    CBroz1 authored Jun 4, 2024
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Commits on Jun 5, 2024

  1. Mua notebook (LorenFrankLab#998)

    * documented some of mua notebook
    
    * mua notebook documented
    
    * documented some of mua notebook
    
    * synced py script
    denissemorales authored Jun 5, 2024
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Commits on Jun 6, 2024

  1. Dandi export and read (LorenFrankLab#956)

    * compile exported files, download dandiset, and organize
    
    * add function to translate files into dandi-compatible names
    
    * add table to store dandi name translation and steps to populate
    
    * add dandiset validation
    
    * add function to fetch nwb from dandi
    
    * add function to change obj_id of nwb_file
    
    * add dandi upload call and fix circular import
    
    * debug dandi file streaming
    
    * fix circular import
    
    * resolve dandi-streamed files with fetch_nwb
    
    * implement review comments
    
    * add admin tools to fix common dandi discrepencies
    
    * implement tool to cleanup common dandi errors
    
    * add dandi export to tutorial
    
    * fix linting
    
    * update changelog
    
    * fix spelling
    
    * style changes from review
    
    * reorganize function locations
    
    * fix circular import
    
    * make dandi dependency optional in imports
    
    * store dandi instance of data in DandiPath
    
    * resolve case of pre-existing dandi entries for export
    
    * cleanup bugs from refactor
    
    * update notebook
    
    * Apply suggestions from code review
    
    Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu>
    
    * add requested changes from review
    
    * make method check_admin_privilege in LabMember
    
    ---------
    
    Co-authored-by: Chris Broz <Chris.Broz@ucsf.edu>
    samuelbray32 and CBroz1 authored Jun 6, 2024
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  2. Minor fixes (LorenFrankLab#999)

    * give analysis nwb new uuid when created
    
    * fix function argument
    
    * update changelog
    samuelbray32 authored Jun 6, 2024
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Commits on Jun 10, 2024

  1. Fix bug in change in analysis_file object_id (LorenFrankLab#1004)

    * fix bug in change in analysis_file_object_id
    
    * update changelog
    samuelbray32 authored Jun 10, 2024
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Commits on Jun 11, 2024

  1. Remove classes for usused tables (LorenFrankLab#1003)

    * LorenFrankLab#976
    
    * Remove notebook reference
    CBroz1 authored Jun 11, 2024
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Commits on Jun 14, 2024

  1. Non-daemon parallel populate (LorenFrankLab#1001)

    * initial non daemon parallel commit
    
    * resolve namespace and pickling errors
    
    * fix linting
    
    * update changelog
    
    * implement review comments
    
    * add parallel_make flag to spikesorting recording tables
    
    * fix multiprocessing spawn error on mac
    
    * move propert
    
    ---------
    
    Co-authored-by: Samuel Bray <samuelbray@som-dfvnn9m-lt.ucsf.edu>
    samuelbray32 and Samuel Bray authored Jun 14, 2024
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Commits on Jun 17, 2024

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