Issue fixes and refactoring

What's Changed

• Remove dependencies on secrets by @RobbinBouwmeester in #322
• Catch GH error by @RobbinBouwmeester in #323
• New parsing for variety of MQ versions by @RobbinBouwmeester in #324
• Add proteobench version for parsing and calc metric by @RobbinBouwmeester in #325
• Test MQ by @RobbinBouwmeester in #326
• Add exceptions by @RobbinBouwmeester in #327
• Update DDA_Quant_ion.py by @RobbinBouwmeester in #329
• Test proline #153 by @wolski in #331
• Nox and notebooks by @wolski in #319
• Refactor gh py 276 by @wolski in #332
• Add pre-commit checks to ProteoBench by @wolski in #334
• add file for testing custom format by @mlocardpaulet in #337
• add i2MassChroQ file for testing by @mlocardpaulet in #336
• Start changing webpage texts by @RobbinBouwmeester in #330
• 🐛 Close 338 parsing MQ 2.6 (minPepLen) by @enryH in #340

Full Changelog: v0.2.10...v0.3.0