v0.4.0

What's Changed

• Update input_file_description.md by @brvpuyve in #358
• Added new sample file for i2MassChroQ by @scaramonche in #362
• Update 2-DDA-Quantification-ion-level.md by @brvpuyve in #365
• fragpipe v22 params file can now be parsed by @scaramonche in #367
• Created DIA quant ion beta page by @Alirezak2n in #364
• Update 2-DDA-Quantification-ion-level.md by @brvpuyve in #368
• Dia by @Alirezak2n in #375
• added a container to download the raw data by @julianu in #369
• Renamed Proline to Proline Studio by @scaramonche in #376
• Rename sample files by @scaramonche in #363
• Change color by @scaramonche in #381
• Delete duplicated plot file in utils/plotting/ by @scaramonche in #379
• Show submission comment instead of additional comment for public runs. by @scaramonche in #382
• added small helper to get info for all submitted datasets by @julianu in #383
• Remove additional params except for comments by @scaramonche in #384
• Add documentation and docstrings, improve DIA-NN parsing, refactoring by @Cajac102 in #378
• Added information about dataset download by @julianu in #391
• Show the corrrect comment fields and information depending on whether they are private of public submissions by @scaramonche in #392
• Proline fix by @scaramonche in #398
• Added back the parameter parsing dict and fixed the gh body message. by @scaramonche in #397
• Add support for maxdia parameter parsing by @Alirezak2n in #394
• Redesign landing page by @RalfG in #390
• Add support for spectronaut by @rodvrees in #399
• Add support for FraggerDIA by @rodvrees in #395
• Support for non-DIANN quant Fragpipe DIA output by @rodvrees in #402
• Enhance plot by @RobbinBouwmeester in #405
• Enhance plot by @Cajac102 in #401
• Merge pull request #405 from Proteobench/enhance_plot by @RobbinBouwmeester in #406
• Fragpipe params by @rodvrees in #408
• Spectronaut: allow comma as decimal separators by @rodvrees in #409
• Update logos by @mlocardpaulet in #411
• Changed tab descriptions by @RobbinBouwmeester in #413
• Change reading of params by @RobbinBouwmeester in #414
• Update index.srt to add the module proposed for the Dev. Meet. by @mlocardpaulet in #410

New Contributors

• @Alirezak2n made their first contribution in #364
• @Cajac102 made their first contribution in #378
• @rodvrees made their first contribution in #399

Full Changelog: v0.3.3...v0.4.0