yeast 8.1.1 #122
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yeast 8.1.1 #122
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regardless if the model is saved with a windows or a MAC machine, the .xml file is now stored with the same scientific format
updated COBRA and libSBML, with no content changes
for avoid undesired changes, it will now only match the format `-00N`, where N is a number 0-9.
matches only "Me-00N", where M and N are numbers 0-9
Making use of I/O scripts more convenient
This reverts commit 491581a.
fix/interOSissues
* removed unused columns * ordered alphabetically * refactored how the information is read by updateMetaboliteAnnotation.m, to be compliant with new data to come
metabolites that had inconsistent information between compartments were not fixed in the last metabolite curation round. Here we include all rows and mention which fields were incorrect in which compartments
metabolites that had inconsistent information between compartments were not fixed in the last metabolite curation round. Here we include CHEBI id annotation for those metabolites
metabolites that had inconsistent information between compartments were not fixed in the last metabolite curation round. Here we fix KEGG id annotation for those metabolites
metabolites that had inconsistent information between compartments were not fixed in the last metabolite curation round. Here we fix the charges for those metabolites
Remade function for defining confidence scores, which fixed 38 scores (most of them from pseudoreactions)
fix/rxnConfidenceScores
RAVEN function "checkModelStruct" was used to detect repeated ids
Fix/metCuration
A non-compliant CHEBI id passed in last curation and was being stored in metNotes
fix-met.annot: wrong CHEBI id
BenjaSanchez
added
the
new release
hongzhonglu
approved these changes
Jun 9, 2018
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.xmlfile is now stored with the same scientific format.rxnConfidenceScores(most of them from pseudoreactions).loadYeastModelandsaveYeastModelwere improved to allow their use also when outside of the actual folder.