Skip to content

Minimap2-2.15 (r905)
Compare
Choose a tag to compare
@lh3 lh3 released this 10 Jan 17:35
· 311 commits to master since this release
v2.15
c404f49

Changes to minimap2:

  • Fixed a rare segmentation fault when option -H is in use (#307). This may
    happen when there are very long homopolymers towards the 5'-end of a read.

  • Fixed wrong CIGARs when option --eqx is used (#266).

  • Fixed a typo in the base encoding table (#264). This should have no
    practical effect.

  • Fixed a typo in the example code (#265).

  • Improved the C++ compatibility by removing "register" (#261). However,
    minimap2 still can't be compiled in the pedantic C++ mode (#306).

  • Output a new "de" tag for gap-compressed sequence divergence.

Changes to paftools.js:

  • Added "asmgene" to evaluate the completeness of an assembly by measuring the
    uniquely mapped single-copy genes. This command learns the idea of BUSCO.

  • Added "vcfpair" to call a phased VCF from phased whole-genome assemblies. An
    earlier version of this script is used to produce the ground truth for the
    syndip benchmark [PMID:30013044].

This release produces identical alignment coordinates and CIGARs in comparison
to v2.14. Users are advised to upgrade due to the several bug fixes.

(2.15: 10 Janurary 2019, r905)

Assets 4
Loading