[Platform]: Comparative genomics visualisation #516
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* [Platform] Add Profile and ProfileHeader to variant page (#376) * [Platform]: variant page widgets init (#380) * draft pharmacokinetics widget (#383) * move reported protein link to description (#381) * [Platform] Add GWAS credible sets widget to variant page (#390) * [Platform] Add QTL credible sets widget to variant page (#396) * [Platform] Add Uniprot id to Uniprot description link (#401) * [Platform] Add allele frequency plot to variant page metadata section (#403) * frequency vis examples * polish plots * allele frequency bars * use flex for allele frequency plot * do not import grid * [Platform] Clean up variant page sections and summaries (#404) * [Platform] Update variant page QTL credible sets widget (#406) * [Platform] Use API for variant page header (#412) * [Platform] Correct dbXref link in variant page header (#414) * [Platform] Fix clinvar dbXref (#417) * [Platform] Use API for metadata in variant page (#420)
* [Platform] Add Profile and ProfileHeader to variant page (#376) * [Platform]: variant page widgets init (#380) * draft pharmacokinetics widget (#383) * move reported protein link to description (#381) * [Platform] Add GWAS credible sets widget to variant page (#390) * [Platform] Add QTL credible sets widget to variant page (#396) * [Platform] Add Uniprot id to Uniprot description link (#401) * [Platform] Add allele frequency plot to variant page metadata section (#403) * [Platform] Clean up variant page sections and summaries (#404) * [Platform] Update variant page QTL credible sets widget (#406) * [Platform] Use API for variant page header (#412) * [Platform] Correct dbXref link in variant page header (#414) * [Platform] Fix clinvar dbXref (#417) * [Platform] Use API for metadata in variant page (#420) * [Platform] Use API data for in silico predictors widget on variant page (#424) Co-authored-by: Carlos Cruz <me@carcruzcast.com> * [Platform] Minor improvements to variant page insilico predictors widget (#429) * [Platform] Add VEP widget to variant page (#428)
* shorten variant ids in widget descriptions * avoid DOM nesting warnings
Co-authored-by: Carlos Cruz <me@carcruzcast.com>
* add study table to study page * fix queries and fill in body * finish body * finish draft * column heading * link and column updates
* adapt allele frequency plot to order of magnitude * increase fixed width of right plot column
* add credible set page * header and profile * finish metadata draft * finish metadata * consistent case in metadata * header title and metadata tooltips * precision * precsion to 3sf
* sort by exponent then mantissa * coloc fix
* fix: SharedTraitStudies * fix: study GWASCredibleSets * fix: study QTLCredibleSetsSection
--------- Co-authored-by: Carlos Cruz <me@carcruzcast.com>
…comparative-genomics
gjmcn
approved these changes
Nov 27, 2024
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[Platform]: Comparative genomics visualisation
Description
Issue: opentargets/issues#3366
Deploy preview: (link)
Todo:
Highlight assessment
Default - Paralogues - Mouse ortholog identity
Type of change
How Has This Been Tested?
Please check the section where it is displayed
Checklist: