Talos image (#152)

* direct no cache dir install from git. Initially targeting release 4.1.0

images.toml

@@ -39,6 +39,7 @@ somalier = '0.2.15'
 star = '2.7.10b'
 strvctvre = 'v.1.10'
 subread = '2.0.6'
+talos = '4.1.0'  # release to build, image names should have specific releases. Can build by naming side-branch
 trtools = '5.0.2'
 vep_105 = '105.0'
 vep_110 = 'release_110.1'

images/talos/Dockerfile

@@ -0,0 +1,23 @@
+FROM python:3.10-bullseye
+
+ARG VERSION=${VERSION:-4.1.0}
+
+RUN apt update && apt install -y \
+        apt-transport-https \
+        bzip2 \
+        ca-certificates \
+        git \
+        gnupg \
+        openjdk-11-jdk-headless \
+        wget \
+        zip && \
+    rm -r /var/lib/apt/lists/* && \
+    rm -r /var/cache/apt/* && \
+    # Google Cloud SDK: use the script-based installation, as the Debian package is outdated.
+    curl https://sdk.cloud.google.com > install.sh && \
+    bash install.sh --disable-prompts --install-dir=/opt && \
+    rm install.sh
+
+ENV PATH=$PATH:/opt/google-cloud-sdk/bin
+
+RUN pip install --no-cache-dir metamist git+https://github.com/populationgenomics/automated-interpretation-pipeline.git@${VERSION}