Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Matlab routines for online non-rigid motion correction of calcium imaging data

Preprocessing of diffusion MRI

Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system

CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

FALCON is a Python-based software application designed to facilitate PET motion correction, both for head and total-body scans. Our program is built around the fast 'greedy' registration toolkit, which serves as the registration engine. With FALCON, users can enjoy a streamlined experience for implementing motion correction.

Hands-on examples for motion estimation and correction in MRI

Flow-Registration toolbox for 2P motion compensation

Temporal Derivative Distribution Repair: A motion correction method for fNIRS

Quantitative MRI toolbox in Python

Python tools for MERLIN

Free-breathing myocardial T1 mapping with Physically-Constrained Motion Correction

A U-Net based end-to-end MRI motion correction. With/Without GAN version is available.

Figures for MERLIN paper and demo of pymerlin

Suite of Python programs used for 2-photon calcium imaging analysis

PKGBUILD of CaImAn for Archlinux

Modelling of BgRT PET susbsystem using GATE Monte Carlo code

vNav motion correction reduces variation in morphometric measures of structures implicated in neurodegenerative disease

Server running on AWS (EC2 instance): ANTs Motion Correction template module implemented on Mercure DICOM server