feat: adding 50bp filter for REF/ALT on clinvar-sv import (#293) #294
clippy
6 warnings
Details
Results
| Message level | Amount |
|---|---|
| Internal compiler error | 0 |
| Error | 0 |
| Warning | 6 |
| Note | 0 |
| Help | 0 |
Versions
- rustc 1.73.0 (cc66ad468 2023-10-03)
- cargo 1.73.0 (9c4383fb5 2023-08-26)
- clippy 0.1.73 (cc66ad4 2023-10-03)
Annotations
Check warning on line 342 in src/clinvar_sv/cli/query.rs
github-actions / clippy
this expression creates a reference which is immediately dereferenced by the compiler
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/clinvar_sv/cli/query.rs:342:60
|
342 | print_record(&mut out_writer, args.out_format, &record)?;
| ^^^^^^^ help: change this to: `record`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
Check warning on line 339 in src/clinvar_sv/cli/query.rs
github-actions / clippy
this expression creates a reference which is immediately dereferenced by the compiler
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/clinvar_sv/cli/query.rs:339:20
|
339 | .query(&range)
| ^^^^^^ help: change this to: `range`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
Check warning on line 279 in src/clinvar_sv/cli/query.rs
github-actions / clippy
this expression creates a reference which is immediately dereferenced by the compiler
warning: this expression creates a reference which is immediately dereferenced by the compiler
--> src/clinvar_sv/cli/query.rs:279:48
|
279 | let contig = extract_chrom::from_range(&range, Some(&self.meta.genome_release))?;
| ^^^^^^ help: change this to: `range`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
Check warning on line 53 in src/clinvar_sv/cli/import.rs
github-actions / clippy
the borrowed expression implements the required traits
warning: the borrowed expression implements the required traits
--> src/clinvar_sv/cli/import.rs:53:38
|
53 | Box::new(std::fs::File::open(&path_in_jsonl)?)
| ^^^^^^^^^^^^^^ help: change this to: `path_in_jsonl`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
Check warning on line 50 in src/clinvar_sv/cli/import.rs
github-actions / clippy
the borrowed expression implements the required traits
warning: the borrowed expression implements the required traits
--> src/clinvar_sv/cli/import.rs:50:13
|
50 | &path_in_jsonl,
| ^^^^^^^^^^^^^^ help: change this to: `path_in_jsonl`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#needless_borrow
= note: `#[warn(clippy::needless_borrow)]` on by default
Check warning on line 223 in src/clinvar_sv/cli/query.rs
github-actions / clippy
redundant field names in struct initialization
warning: redundant field names in struct initialization
--> src/clinvar_sv/cli/query.rs:223:13
|
223 | meta: meta,
| ^^^^^^^^^^ help: replace it with: `meta`
|
= help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#redundant_field_names
= note: `#[warn(clippy::redundant_field_names)]` on by default