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Allotetraploid

kjenike edited this page Feb 21, 2023 · 1 revision

An allotetraploid usually is formed from the hybridization of two different species, which means there are two sets of distinct chromosomes.

The GenomeScope 2.0 paper (https://www.nature.com/articles/s41467-020-14998-3) describes the difference between allotetraploids and autotetraploids. Figure 2 from that paper is below to give a better representation of how these two broad types of polyploids arise.

image

And, from the same paper, figure 6a, we can see an example allotetraploid

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This particular histogram was made from reads from Gossypium barbadense.

Table of content

Introduction

k-mer spectra analysis

Separation of chromosomes

Species assignment using short k-mers

Others

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