Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

GCP Variant Transforms

Powerful statistics for VCF files

A python parser to simplify and build the VCF (Variant Call Format).

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks

A full-featured Python package for parsing and creating iCalendar and vCard files

Intersect multiple VCF files with haplotype awareness

Visualize microbial evolution at the SNP level!

A simple Python script for extracting images out of an "SMS Backup & Restore" backup.

CNV analysis based on the depth of coverage of Illumina data

vSNP -- validate SNPs

VCF file synthesiser with random variants

A python library to develop genomic data simulators

A utility to merge a large number of VCF files incrementally

Collection of several small tools. These tools stay here temporarily and may move to other major repositories as they evolve.

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

A quick way to visualize VCF data in a html report

🗃 VCF file converter fixing non-standard VCF files

API to read, write, and filter DNA sequence alignment files