Releases: WayScience/CytoSnake
Releases · WayScience/CytoSnake
0.0.2
What's Changed
- CytoSnake Bug Fixes From Cell-Health Data Usage by @axiomcura in #87
Full Changelog: v0.0.1...v0.0.2
intial release
What's Changed
- Initial DAG implementation by @axiomcura in #1
- Config file implementation and added
snakefmt
anddry run
tests documentation by @axiomcura in #5 - Feature Select Implementation to CytoPipe by @axiomcura in #6
- Implementing iterative support for CytoPipe by @axiomcura in #8
- Multi-processing implementation in aggregation by @axiomcura in #10
- Removed Multi-processing and replaced it with
Snakemake's
native multiprocessing support by @axiomcura in #11 - Logging implementation for CytoPipe by @axiomcura in #14
- CytoPipe CLI implementation by @axiomcura in #15
- CLI argument handler restructuring by @axiomcura in #16
- Implementing
dp_process
intocytosnake
by @axiomcura in #17 - Renaming
CytoPipe
toCytoSnake
by @axiomcura in #19 - CytoSnake Sphinx Documentation by @axiomcura in #20
- adding pre-commit hooks by @axiomcura in #24
- CytoSnake New Pathing implementation by @axiomcura in #26
- Pre commit formatting applied by @axiomcura in #30
- Helper function implementation by @axiomcura in #31
- Decoupling rule modules into individual components by @axiomcura in #33
- New Workflow:
cp_process_singlecells
! by @axiomcura in #37 - Allow CytoSnake to default to
mamba
as default package manager by @axiomcura in #45 - Add barcode logic to CytoSnake's CLI by @axiomcura in #46
- Replace
os
library withpathlib
in workflow scripts by @axiomcura in #47 - Integrating Configs into helper functions by @axiomcura in #50
- Remove git dep by @axiomcura in #52
- Update CytoTable Environment File by @axiomcura in #56
- Adding
annotate
module in thecp_process_singlecells
workflow by @axiomcura in #58 - adding
get_input()
helper function by @axiomcura in #60 - Update
get_input()
function toget_data_path()
and implement it within modules by @axiomcura in #63 - Update: Updated Documentation and Deploying Documentation to Read the Docs webpage by @axiomcura in #65
- Rtd build fix by @axiomcura in #66
- logo by @vincerubinetti in #69
- Fixed API not able to be rendered in website by @axiomcura in #68
- Add supporting documents and some cleanup by @gwaybio in #71
- update CLI help documentation by @axiomcura in #72
- Improving Functional Test With
pytest
Fixtures by @axiomcura in #75 - Adding testing framework documentation by @axiomcura in #77
New Contributors
- @vincerubinetti made their first contribution in #69
- @gwaybio made their first contribution in #71
Full Changelog: https://github.com/WayScience/CytoSnake/commits/v0.0.1