Release v3.3.0

What's Changed

• Add compute parameters by @blowekamp in #108

Full Changelog: v3.2.0...v3.3.0

Release v3.2.0

What's Changed

• Set spacing in HedwigZarrImage.extract_2d by @blowekamp in #92
• Add Jupyter notebooks for registration and visualization by @blowekamp in #93
• Update command line docs to current utilities by @blowekamp in #95
• Add utility functions for visualizing ZARR images in Neroglancer by @blowekamp in #94
• Use increase-if-necessary versioning strategy by @blowekamp in #98
• Bump actions/cache from 3 to 4 by @dependabot in #102
• Bump actions/checkout from 3 to 4 by @dependabot in #100
• Bump actions/download-artifact from 3 to 4 by @dependabot in #101
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #103
• Bump actions/setup-python from 4 to 5 by @dependabot in #104
• Fix doc formatting for weighted_quantile by @blowekamp in #105
• Update simpleitkutilities requirement from ~=0.2.0 to ~=0.3.0 by @dependabot in #99
• ROI Data Classes by @blowekamp in #106
• Remove mrc2nifti commandline. by @blowekamp in #96
• Add is_16bit method by @blowekamp in #107

New Contributors

• @dependabot made their first contribution in #102

Full Changelog: v3.1.1...v3.2.0

Release v3.1.1

What's Changed

• Fix typo in Flour used to detect non RGB by @blowekamp in #91

Full Changelog: v3.1...v3.1.1

Release v3.1

What's Changed

• Add option to rechunk to load array into memory by @blowekamp in #90

Full Changelog: v3.0...v3.1

Release v3.0

What's Changed

• Add zarr_extract_2d to help generate thumbnail images from OME-NGFF ZARR by @blowekamp in #62
• Update to published 0.2 version of SimpleITKUtilities by @blowekamp in #63
• Fix turfflehog pip version syntax by @blowekamp in #66
• Add zarr test data by @blowekamp in #68
• Implement HedwigZarrImages classes by @blowekamp in #65
• add testing for HedwigZarrImage::rechunk method by @blowekamp in #70
• Fix maybe rgb iterleaved by @blowekamp in #69
• Add sample zarr of tiff converted to zarr by @blowekamp in #71
• Add compressor option to rechunking by @blowekamp in #72
• Update docs for precommit usage by @blowekamp in #74
• Update tests for hedwingZarrImage.zarr_rechunk by @annshress in #73
• exclude fspec 2023.9.0 version by @blowekamp in #77
• Add CZI IF data by @blowekamp in #76
• Add test for bad .zarr file with missing OME xml by @annshress in #75
• Add czi tests by @annshress in #78
• Update requirements to SimpleITK 2.3.0 by @blowekamp in #79
• Fixes dtype('>u2') key error when extracting 2d image by @blowekamp in #82
• Add dependabot.yml by @blowekamp in #84
• Fix dependabot.yml location by @blowekamp in #85
• Raise detailed exception with unsupported channel information by @blowekamp in #83
• Add exception when duplicate series zarr paths are detected. by @blowekamp in #86
• Swap the range and window values by @blowekamp in #87
• Quantiles parameters by @blowekamp in #88
• Only one job upload python wheel in gha by @blowekamp in #80
• Fix GHA and syntax by @blowekamp in #89

New Contributors

• @annshress made their first contribution in #73

Full Changelog: v2.0.0...v3.0

Release v3.0b04

What's Changed

• Quantiles parameters by @blowekamp in #88

Full Changelog: v3.0b03...v3.0b04

Release v3.0b03

What's Changed

• Add exception when duplicate series zarr paths are detected. by @blowekamp in #86
• Swap the range and window values by @blowekamp in #87

Full Changelog: v3.0b02...v3.0b03

Release v3.0b02

What's Changed

• Fixes dtype('>u2') key error when extracting 2d image by @blowekamp in #82
• Add dependabot.yml by @blowekamp in #84
• Fix dependabot.yml location by @blowekamp in #85
• Raise detailed exception with unsupported channel information by @blowekamp in #83

Full Changelog: v3.0b01...v3.0b02

Release v3.0b01

What's Changed

• Add zarr_extract_2d to help generate thumbnail images from OME-NGFF ZARR by @blowekamp in #62
• Update to published 0.2 version of SimpleITKUtilities by @blowekamp in #63
• Fix turfflehog pip version syntax by @blowekamp in #66
• Add zarr test data by @blowekamp in #68
• Implement HedwigZarrImages classes by @blowekamp in #65
• add testing for HedwigZarrImage::rechunk method by @blowekamp in #70
• Fix maybe rgb iterleaved by @blowekamp in #69
• Add sample zarr of tiff converted to zarr by @blowekamp in #71
• Add compressor option to rechunking by @blowekamp in #72
• Update docs for precommit usage by @blowekamp in #74
• Update tests for hedwingZarrImage.zarr_rechunk by @annshress in #73
• exclude fspec 2023.9.0 version by @blowekamp in #77
• Add CZI IF data by @blowekamp in #76
• Add test for bad .zarr file with missing OME xml by @annshress in #75
• Add czi tests by @annshress in #78
• Update requirements to SimpleITK 2.3.0 by @blowekamp in #79

New Contributors

• @annshress made their first contribution in #73

Full Changelog: v2.0.0...v3.0b01

Release v2.0.0

What's Changed

• Remove mrc2ngpc script by @blowekamp in #48
• Add zarr_rechunk command line tool by @blowekamp in #49
• Preserve array storage options when rechunking by @blowekamp in #50
• Histogram update for zarr by @blowekamp in #51
• Add initial version of zarr_build_multiscales. by @blowekamp in #52
• Explicitly compute dask histogram into np arrays by @blowekamp in #53
• Compute histogram with Dask by @blowekamp in #54
• Update packaging to remove setup.py by @blowekamp in #57
• Histogram refactor by @blowekamp in #58
• Update to use SimpleITKUtilities from PyPI. by @blowekamp in #60
• Remove mrc2nifit command line by @blowekamp in #59
• Restore clamping for the computed visual min max range. by @blowekamp in #61

Full Changelog: v1.3.6...v2.0.0