SLEAP v1.4.1a1

SLEAP v1.4.1a1 is a pre-release. See 1.3.3 for the latest stable release. There are many changes to dependencies in this pre-release: if you are having installation issues with v1.3.3, you should try this version instead.

Quick install

mamba (Windows/Linux/GPU):

mamba create -y -n sleap_v1.4.1a1 -c conda-forge -c nvidia -c sleap/label/dev -c anaconda sleap=1.4.1a1

mamba (Mac):

mamba create -y -n sleap_v1.4.1a1 -c conda-forge -c anaconda -c sleap/label/dev sleap=1.4.1a1

pip (any OS except Apple Silicon):

pip install sleap[pypi]==1.4.1a1

What's Changed

Enhancements

• Add options to set background color when exporting video by @scott-yj-yang in #1328
• Increase range on batch size by @roomrys in #1513
• Add resize/scroll to training GUI by @KevinZ0217 in #1565
• support loading slp files with non-compound types and str in metadata by @lambdaloop in #1566
• change inference pipeline option to tracking-only by @shrivaths16 in #1666
• Only propagate Transpose Tracks when propagate is checked by @vaibhavtrip29 in #1748
• Add batch size to GUI for inference by @shrivaths16 in #1771
• Add ZMQ support via GUI and CLI by @shrivaths16 in #1780
• Change menu name to match deleting predictions beyond max instance by @shrivaths16 in #1790
• Adding ragged metadata to info.json by @shrivaths16 in #1765
• Add option to export to CSV via sleap-convert and API by @eberrigan in #1730

Refactors

• Set default callable for match_lists_function by @roomrys in #1520
• Allow passing in Labels to app.main by @roomrys in #1524
• Replace (broken) --unrag with --ragged by @roomrys in #1539
• Add function to create app by @roomrys in #1546
• Refactor AddInstance command by @roomrys in #1561

Fixes

• Graceful failing with seeking errors by @talmo in #1712
• Fix IndexError for hdf5 file import for single instance analysis files by @shrivaths16 in #1695
• Import DLC with uniquebodyparts, add Tracks by @getzze in #1562
• Make the hdf5 videos store as int8 format by @lambdaloop in #1559
• Scale new instances to new frame size by @ssrinath22 in #1568
• Fix package export by @talmo in #1619
• View Hyperparameter nonetype fix by @shrivaths16 in #1766

Dependency Changes

• Replace imgaug with albumentations by @talmo in #1623
• Fix out of bounds albumentations issues and update dependencies by @eberrigan in #1724
• Update to new TensorFlow conda package by @eberrigan in #1726
• Fix conda builds by @eberrigan in #1776

Workflow Changes

• Fix CI on macosx-arm64 by @talmo in #1734
• Upgrade build actions for release by @eberrigan in #1779
• Fix website build and remove build cache across workflows by @eberrigan in #1786
• Bump to 1.4.1a1 by @eberrigan in #1791

Website Changes

• Add ABL:AOC 2023 Workshop link by @roomrys in #1673

New Contributors

• @scott-yj-yang made their first contribution in #1328
• @lambdaloop made their first contribution in #1559
• @ssrinath22 made their first contribution in #1568

Full Changelog: v1.3.3...v1.4.1a1