HISTORY.md

0.3.1 / 2024-12-11

• Set request_cpus as integer by @dachengx in #220
• Keep only one Directory.SHARED_SCRATCH by @dachengx in #222
• Revert "Keep only one Directory.SHARED_SCRATCH" by @dachengx in #223
• Add the workflow id to the folder in staging-davs by @dachengx in #224
• Fix livetime bug in get_expectation_values() by @hammannr in #227
• Add file hash to blueice hash by @hammannr in #225
• Make metadata error message more informative by @hammannr in #229
• Add unused needs_reinit parameters to ignored parameters by @hammannr in #230
• Tar user-installed blueice to osg nodes by @hammannr in #231
• Source-wise interpolation by @hammannr in #228
• Fix bug, only add tarball when git installed by @dachengx in #233
• Switch to master for docformatter by @dachengx in #234
• Update blueice dependence by @hammannr in #236

Full Changelog: https://github.com/XENONnT/alea/compare/v0.3.0...v0.3.1

0.3.0 / 2024-09-21

• Use pyproject.toml to install alea-inference by @dachengx in #192
• Removed deprecated _pegasus_properties by @FaroutYLq in #196
• Simplify SubmitterHTCondor by @dachengx in #193
• Debug for pypi build by @dachengx in #197
• There was a typo in docstr by @FaroutYLq in #198
• Prefer f-string than format by @dachengx in #200
• Use tree structure work directory by @dachengx in #202
• Use MB all the time in SubmitterHTCondor, no more kB by @dachengx in #201
• Decompress outputs into outputfolder by @dachengx in #199
• Support more toydata_mode by @dachengx in #206
• No need to plan or submit workflow if no job added by @dachengx in #207
• Save log for OSG jobs by @dachengx in #208
• Use shlex.quote to convert the arguments into unix format by @dachengx in #209
• Fix the usage of scripts by @dachengx in #210
• Add spectrum_axis configuration for SpectrumTemplateSource by @dachengx in #212
• Use utilix to validate X509 proxy by @dachengx in #213
• Tarball all needed templates from different folder by @dachengx in #214
• Fix the path of alea_run_toymc script by @dachengx in #216
• Tarball alea for later user installation by @dachengx in #215
• Use install.sh from utilix by @dachengx in #217
• Bump version of utilix by @dachengx in #218

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.8...v0.3.0

0.2.8 / 2024-08-26

• Fix OSG submission by @hammannr in #189

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.7...v0.2.8

0.2.7 / 2024-08-07

• Trigger PyPI workflow on "published" by @hammannr in #185
• Fix apply efficiency by @hammannr in #187
• Conditional Parameters by @hammannr in #186
• Enable choosing the fit strategy by @hammannr in #182

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.6...v0.2.7

0.2.6 / 2024-07-31

• Defunctionalize apply_efficiency, apply efficiency when efficiency_name is specified by @dachengx in #183

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.5...v0.3.0

0.2.5 / 2024-07-30

• Consistent sorting for BlueiceExtendedModel by @hammannr in #149
• Fixed data storing by @hammannr in #152
• Add lxml_html_clean to fix readthedocs building error by @zihaoxu98 in #157
• Fitting index variables by @zihaoxu98 in #156
• Print Argument combinations to be submitted by @hammannr in #151
• Minor changes to fitting index variables (PR #156) by @hammannr in #159
• Set i_batch for SubmitterLocal when submitting by @dachengx in #164
• Debug for interpolator deduction of NeymanConstructor by @dachengx in #165
• The first i batch should be 0 by @dachengx in #166
• Try prefix every file path in likelihood configuration with template folder by @dachengx in #169
• Forbid prexing every key when adapt_likelihood_config_for_blueice by @FaroutYLq in #170
• Refactored Pegasus-based OSG submitter by @FaroutYLq in #163
• Try fixing #173 by @dachengx in #176
• Allow assigning kwargs in debug mode by @dachengx in #174
• Allow confidence_level in filename by @dachengx in #179
• Add 68% coverage as one of the defaults of confidence_levels by @dachengx in #180
• Document to increase CPUs by @FaroutYLq in #178

New Contributors

• @FaroutYLq made their first contribution in #170

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.4...v0.2.5

0.2.4 / 2024-03-18

• Point away from alea for physics models by @kdund in #143
• Make "piecewise" the default pdf interpolation by @hammannr in #142
• Enforce bins in config and template to match by @hammannr in #144
• Make model histograms accessible by @hammannr in #140
• Make local submitter verbose by @hammannr in #146
• Estimator of signal multiplier based on perturbation theory by @zihaoxu98 in #147

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.3...v0.2.4

0.2.3 / 2024-02-22

• Improve check of already made toydata and output by @dachengx in #128
• Combine several jobs into one to save computation resources by @dachengx in #131
• Check locate loaded package by @dachengx in #134
• Update hypotheses and common_hypothesis by pre_process_poi by @dachengx in #135
• Print total number of submitted jobs by @dachengx in #137

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.2...v0.2.3

0.2.2 / 2024-01-13

• Save dtype of valid_fit as bool by @dachengx in #123
• Optional setting of random seed for debugging by @dachengx in #122
• Tiny minor change on docstring by @dachengx in #126
• Change example filename extension by @kdund in #93
• Add axis_names to example templates by @hammannr in #127
• Evaluate blueice_anchors expression by @dachengx in #124
• Update pypi to use trusted publisher by @dachengx in #130
• Update versions of blueice and inference-interface by @dachengx in #132

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.1...v0.2.2

0.2.1 / 2023-12-08

• Add optional argument degree_of_freedom for asymptotic_critical_value by @dachengx in #86
• Update readthedocs configurations by @dachengx in #88
• Update tutorials by @hammannr in #89
• Add column to toyMC results with minuit convergence flag by @kdund in #91
• Debug a typo at docstring of fittable parameter by @dachengx in #95
• Improve documentation by @hammannr in #101
• Update Neyman threshold when changing runner_args by @hammannr in #100
• Allow submitter to skip the already succeeded files by @dachengx in #94
• Print time usage of Runner.run by @dachengx in #104
• Get expectation values per likelihood term by @hammannr in #106
• Prevent arguments to submission variations being changed by deepcopy-ing them. by @dachengx in #107
• Make error message more explicit that an excecutable is not found and… by @kdund in #109
• Read poi and expectation directly from output_filename to accelerate NeymanConstructor by @dachengx in #108
• Direct call of used parameters of model by @dachengx in #112
• Add function to get all sources names from all likelihoods by @dachengx in #111
• Make sure values of parameters that need re-initialization are not changed by @hammannr in #110
• Allow all computation names by @kdund in #116
• Debug for the missing argument in _read_poi by @dachengx in #118
• Remove unnecessary warning given new ptype constraints by @dachengx in #119

Full Changelog: https://github.com/XENONnT/alea/compare/v0.2.0...v0.2.1

0.2.0 / 2023-09-01

• Proposal to use pre-commit for continuous integration by @dachengx in #78
• Example notebooks by @hammannr in #75
• Simplify TemplateSource, CombinedSource and SpectrumTemplateSource by @dachengx in #69
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #80
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #82
• Add Submitter and NeymanConstructor by @dachengx in #79

New Contributors

• @pre-commit-ci made their first contribution in #80

Full Changelog: https://github.com/XENONnT/alea/compare/v0.1.0...v0.2.0

0.1.0 / 2023-08-11

• Unify and clean code style and docstring by @dachengx in #68
• First runner manipulating statistical model by @dachengx in #50
• Set best_fit_args to confidence_interval_args if None by @kdund in #76
• Livetime scaling by @kdund in #73

Full Changelog: https://github.com/XENONnT/alea/compare/v0.0.0...v0.1.0

0.0.0 / 2023-07-28

• readme update with pointer to previous work in lieu of commit history by @kdund in #8
• Adds a statistical model base class (under construction by @kdund in #7
• change folder/module name by @kdund in #9
• Move submission_script.py also from binference to here by @dachengx in #10
• Add simple gaussian model by @hammannr in #12
• Parameter class by @hammannr in #19
• Confidence intervals by @kdund in #27
• Update README.md by @kdund in #29
• Init code style checking, pytest, and coverage by @dachengx in #31
• Add templates for wimp example by @hoetzsch in #30
• Removes all hash for parameters not used for each source, and for all… by @kdund in #37
• First implementation of an nT-like likelihood by @hammannr in #32
• Check if some parameter is not set as guess when fitting by @kdund in #44
• Fix likelihood_names check in statistical_model.store_data to handle unnamed likelihoods by @kdund in #45
• Create pull_request_template.md by @dachengx in #46
• Codes style cleaning by @dachengx in #49
• First runner manipulating statistical model by @dachengx in #47
• Run test on main not master by @dachengx in #55
• Simplify file structure by @dachengx in #51
• Move blueice_extended_model to models by @dachengx in #56
• Change data format to only use structured arrays by @kdund in #42
• Another fitting test by @kdund in #59
• Add first tests module and file indexing system by @dachengx in #54
• Shape parameters by @hammannr in #58
• Recover examples folder, update file indexing, add notebooks folder, remove legacies by @dachengx in #61
• Remove pdf_cache folder before pytest by @dachengx in #65
• Make 0.0.0, initialize documentation structure based on readthedocs, add badges to README by @dachengx in #66

New Contributors

• @kdund made their first contribution in #8
• @dachengx made their first contribution in #10
• @hammannr made their first contribution in #12
• @hoetzsch made their first contribution in #30