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@franklin-feingold franklin-feingold released this 15 Feb 19:01
· 1606 commits to master since this release
v1.7.0
a852510
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Learn about vigilant mode.

Changes

  • BF: Use wikipedia for TIFF URL, adobe's page is 404ing now #1007 (yarikoptic)
  • [FIX] update highlighting of examples, JSON keys and values, and TSV headers or values in the schema #998 (Remi-Gau)
  • [SCHEMA, FIX] Remove mentions of auxdatatypes #996 (tsalo)
  • [MISC] minor wording and consistency improvements for channels.tsv in EEG, MEG, iEEG #993 (sappelhoff)
  • [FIX] typo: extra sentence in anat section #991 (Remi-Gau)
  • [FIX] Optionally support echo entity for VFA suffix #989 (TheChymera)
  • [FIX] update definition acq_time for sessions.tsv #986 (Remi-Gau)
  • [FIX] add microscopy to modalities in schema #984 (Remi-Gau)
  • [INFRA] Fix linkchecker #982 (sappelhoff)
  • [DOC] update steering group composition #976 (Remi-Gau)
  • customize footer on html spec #975 (sappelhoff)
  • [FIX] Update HED appendix to comply with current HED version #970 (VisLab)
  • ENH: Update B0Field metadata to accommodate single-blip fieldmaps #968 (effigies)
  • [FIX] harmonize 'file name' into 'filename' #962 (yarikoptic)
  • [FIX] Reword front page #958 (arokem)
  • [MAINT] Update links to starter kit website #957 (effigies)
  • [FIX] Entity table: Clarify meaning of empty cells #955 (Lestropie)
  • [MISC] Add Eric Earl as a Maintainer #953 (ericearl)
  • [FIX] Spelling errors in appendices #951 (Lestropie)
  • [FIX] Broken hyperlink in entity list file #949 (Lestropie)
  • [FIX] Rewrite inheritance principle #946 (Lestropie)
  • [INFRA] fix "CircleCI redirector" GH-action: remove the 2nd (sanity) check #944 (yarikoptic)
  • [FIX] Typo: ECG_headshape #942 (Moo-Marc)
  • [FIX] description: dwi is specialized T2 weighting, not T2* #939 (sappelhoff)
  • [FIX] relax unrealistically strict requirements with ieeg channels.tsv 'name' column #938 (sappelhoff)
  • [INFRA] expand submenus on landing page automatically #937 (sappelhoff)
  • [FIX] Add links from derivatives section to entity list #936 (sappelhoff)
  • [FIX] Remove repeated words #934 (DimitriPapadopoulos)
  • [INFRA/FIX] Use string concatenation in table macro #933 (effigies)
  • [INFRA] Run linkchecker in stock docker image #932 (effigies)
  • [INFRA] add (optional) pre-commit config file #929 (sappelhoff)
  • [FIX] Clarify that EDF/BDF files MUST have lower case extensions in BIDS #927 (adam2392)
  • [ENH] Generate glossary page from schema #923 (tsalo)
  • [ENH] Render valid value restrictions in tables based on object definitions in schema #921 (tsalo)
  • [ENH] add hemi entity to schema #917 (Remi-Gau)
  • [INFRA] PDF version of spec: fix handling of internal links #915 (sappelhoff)
  • [ENH] update and reformat table for template in coordinate system page #903 (Remi-Gau)
  • [ENH] add details for content of \*\_beh.json #902 (Remi-Gau)
  • [SCHEMA] Add MeasurementToolMetadata and Derivative metadata fields #899 (tsalo)
  • [SCHEMA] Add new MEG files and fix entity tables #898 (tsalo)
  • [FIX] small typo in json example #897 (Remi-Gau)
  • [INFRA] tiny speedup of building PDF by moving re.compile\(\) outside of a loop #896 (DimitriPapadopoulos)
  • [INFRA] Document *.webm video files as binary #895 (DimitriPapadopoulos)
  • [SCHEMA] add physio to schema or EEG, MEG, iEEG, PET, ASL, DWI #894 (Remi-Gau)
  • [SCHEMA] Reorganize schema code into a package #892 (tsalo)
  • [FIX] Clarify shifting dates RECOMMENDED, add example EDF #891 (sappelhoff)
  • [INFRA] fix draft rendering css on mobile or when browser window is narrow #889 (sappelhoff)
  • [MISC] Add an animated BIDS logo #886 (adswa)
  • [SCHEMA] Consolidate schema files by term type #883 (tsalo)
  • [ENH] BEP031: Microscopy #881 (mariehbourget)
  • [INFRA] jQuery 3.4.1 → 3.6.0 #875 (DimitriPapadopoulos)
  • [INFRA] Add "codespell" tool to CI checks to catch typos sooner #873 (DimitriPapadopoulos)
  • [INFRA] Several style fixes (Flake8) for Python code in the repo #872 (DimitriPapadopoulos)
  • [FIX] Make subheadings consistent in 06-longitudinal-and-multi-site-studies.md #870 (guiomar)
  • [DOC] add Anthony as maintainer #868 (Remi-Gau)
  • [MISC] add "forward slash" requirement for paths to common principles #867 (sappelhoff)
  • [ENH] Add "ScanRAS" as an accepted coordinate frame for ieeg #866 (alexrockhill)
  • [INFRA] Add .lgtm.yml file for better usage of LGTM CI tool #865 (DimitriPapadopoulos)
  • [FIX] update physio bids name in longitudinal study page examples #863 (Remi-Gau)
  • [INFRA] Enforce consistent line endings via .gitattributes #861 (DimitriPapadopoulos)
  • [INFRA] dos2unix #859 (DimitriPapadopoulos)
  • [FIX] Clarify case collision intolerance as a file naming principle #858 (yarikoptic)
  • [INFRA] LGTM recommendation: Unused local variable #853 (DimitriPapadopoulos)
  • [INFRA] LGTM warning: Variable defined multiple times #851 (DimitriPapadopoulos)
  • [FIX] Typos found by codespell #848 (DimitriPapadopoulos)
  • [ENH] Add links to example datasets for each modality #845 (Remi-Gau)
  • [INFRA] Add basic documentation on how to use metadata table macros #840 (Remi-Gau)
  • [ENH] make "Institutional department name" available for all datatypes #839 (Remi-Gau)
  • [INFRA] use macro to render examples in a "tree" like fashion #837 (Remi-Gau)
  • [FIX] Add angio suffix to the non-parametric aMRI suffix table #835 (tsalo)
  • [FIX] Remove last hardcoded suffix table #833 (tsalo)
  • [MISC] make explicit that EDF+ (and for EEG: BDF+) are included in iEEG / EEG format requirements #831 (sappelhoff)
  • [SCHEMA] Add TSV column files #827 (tsalo)
  • [ENH] add metadata to PET calibration factor: "DoseCalibrationFactor" #825 (CPernet)
  • [FIX] correct file location of scans.tsv file in example #824 (ghisvail)
  • [FIX] Add missing closing parenthesis in 02-common-principle.md #822 (sebastientourbier)
  • [MISC] update available datatypes in specification #819 (sappelhoff)
  • [FIX] document required column order MEG, EEG, iEEG, PET, and fix typo iEEG #818 (sappelhoff)
  • [ENH] BEP031 - New columns to participants.tsv file #816 (mariehbourget)
  • [MISC] make table headers bold #815 (Remi-Gau)
  • [FIX] What is a composite instance? Change to measurement for non MRI modalities? #813 (rob-luke)
  • [ENH] BEP031 - New entity: sample and samples.tsv file #812 (mariehbourget)
  • [ENH] Add device and acquisition metadata for physio files #806 (Remi-Gau)
  • [MISC] Move section on sessions.tsv file: longitudinal files -> modality agnostic files #805 (Remi-Gau)
  • [ENH] Make explicit that "task" metadata applies to "beh" modality #804 (Remi-Gau)
  • [MISC] Make MRI-centric language more general in Events #801 (sappelhoff)
  • [ENH] clarify that entities MUST be unique #800 (sappelhoff)
  • [MISC] deprecate DCOffsetCorrection field from ieeg.json: Use SoftwareFilters field instead #799 (sappelhoff)
  • [FIX] Deprecate ScanDate (PET) in favor of AcquisitionTime in scans.tsv files #798 (mnoergaard)
  • [MISC] add IETF standard link for json #797 (sappelhoff)
  • [INFRA] In PDF, color every other row in table in light gray fill #794 (sappelhoff)
  • [MISC] add link to guide on how to write a good README #793 (sappelhoff)
  • [SCHEMA] Apply schema rules to entity values #792 (tsalo)
  • [INFRA] fix md ci and update ci badges #791 (sappelhoff)
  • [SCHEMA] Use macro for filename templates in file collections appendix #787 (tsalo)
  • [FIX] consistently refer to DICOM Tags throughout the specification #786 (Hboni)
  • [FIX] Amend note about *b*-vecs on DWI specs #782 (oesteban)
  • [INFRA] add CI to find trailing whitespace #780 (sappelhoff)
  • [MISC] Add info on HED key to common principles #777 (sappelhoff)
  • [ENH] add EEGLAB as valid coordinate system for EEG #775 (sappelhoff)
  • [SCHEMA] Add metadata term files #774 (tsalo)
  • [SCHEMA] Add suffix term files #772 (tsalo)
  • [ENH] Allow encoding the fieldmapping intent of the protocol #622 (oesteban)
  • [FIX] Correct iEEG example that contained double suffixes #463 (yarikoptic)
  • [ENH] introduce GeneratedBy to "core" BIDS #440 (yarikoptic)
Assets 2
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