Commits on May 1, 2024

1. feat: first attempt at adding the fms_diag_object to diag manager

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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2. feat: Second attempt at adding the fms_diag_object to diag manager

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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3. feat: Adds diag_object to diag_manager folder and compiles.

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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4. feat: Adds modern diag namelist variable

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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5. feat: setup diag_yaml_object and remove object overrides

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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6. feat: Adds all variables to diag object that are registered.

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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7. fix: setup register routines in diag_object

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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8. fix: typos in filling in missing value for diag object registration.

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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9. feat: Initial add of fms_diag_yaml_object.F90

   

   thomas-robinson authored and rem1776 committed May 1, 2024
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10. fix: compile errors in new diag manager related to objects

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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11. feat: updates getter functions in the diag yaml objects

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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12. feat: add diag_yaml object (NOAA-GFDL#866)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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13. feat: Add the fms_diag_object container. (NOAA-GFDL#867)

    

    ngs333 authored and rem1776 committed May 1, 2024
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14. fix: Changes fms_diag_object to fmsDiagObject_type (NOAA-GFDL#879)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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15. test: Dm update diag_yaml_object_init() tests (NOAA-GFDL#883)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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16. feat: add getter functions to fms_diag_object (NOAA-GFDL#885)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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17. fix: diag_manager container and linked list updates and add test (NOA… …

    …A-GFDL#888)

    

    ngs333 authored and rem1776 committed May 1, 2024
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18. feat: Moves fms_diag_yaml_obj to fms_diag_yaml and updates test (NOAA… …

    …-GFDL#887)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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19. fix: diag_yaml object fix frequency and reading reductions (NOAA-GFDL… …

    …#901)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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20. feat: add has_* functions for allocatables (NOAA-GFDL#910)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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21. feat: update functions to be pure in diag and yaml objects (NOAA-GFDL… …

    …#923)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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22. feat: modern diag add diag_model_subset behaviour for ocean models (N… …

    …OAA-GFDL#927)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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23. feat: rework logic to ignore non-written files (NOAA-GFDL#936)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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24. feat: updates for setting/getting base time variables and add test (N… …

    …OAA-GFDL#937)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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25. feat: add fms_find_unique to string_utils (NOAA-GFDL#938)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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26. chore: Remove use_mpp_io from diag manager (NOAA-GFDL#940)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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27. feat: Modern diag register_diag_field set up (NOAA-GFDL#939) …

    * Add the 'modern' register routines in diag_manager

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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28. feat: modern diag init updates to get number of unique fields and err… …

    …or out without flag (NOAA-GFDL#944)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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29. Yaml updates (NOAA-GFDL#942) …

    * remove the realm key
    
    * Changed output_name to an optional field

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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30. fix: modern diag removes realm variables and cleans up white space (N… …

    …OAA-GFDL#947)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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31. feat: update and add helper routines for register_diag_field (NOAA-GF… …

    …DL#950)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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32. feat: Update supported types in diag_manager (NOAA-GFDL#955)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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33. feat: add diag axis obj (NOAA-GFDL#966)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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34. feat: modern diag add number of diurnal sample and power level to the… …

    … yaml (NOAA-GFDL#977)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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35. feat: modern diag subregional yaml update (NOAA-GFDL#973)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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36. feat: add diag file object (NOAA-GFDL#943)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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37. feat: Diag_axis_init set up (NOAA-GFDL#978)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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38. feat: modern diag add io routines for diag_axis object (NOAA-GFDL#982)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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39. feat: finish register diag field routines (NOAA-GFDL#984)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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40. feat: modern diag allow for variables with the same name, but differe… …

    …nt module (NOAA-GFDL#988)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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41. feat: add a modern version of add_diag_axis_attribute (NOAA-GFDL#990)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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42. feat: modern diag implement register_static_field and move diag_objs … …

    …array (NOAA-GFDL#995)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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43. fix: class(*) updates needed for compatibility of dmUpdate with 2022.… …

    …03 (NOAA-GFDL#1011)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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44. fix: Compiling dmUpdate post merge of 2022.03-beta1 (NOAA-GFDL#979)

    

    ngs333 authored and rem1776 committed May 1, 2024
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45. docs: modern diag uml design update (NOAA-GFDL#1015)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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46. feat: modern diag add time info to diag file obj (NOAA-GFDL#1002)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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47. feat: modern diag add field attributes and implement old getter routi… …

    …nes (NOAA-GFDL#998)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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48. feat: Modern diag_manager use integer parameters instead of strings (N… …

    …OAA-GFDL#1016)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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49. feat: redesign objects and add diag field object (NOAA-GFDL#1017)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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50. fix: modern diag make type bound procedures private except when throu… …

    …gh the type (NOAA-GFDL#1022)

    

    rem1776 authored and rem1776 committed May 1, 2024
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51. docs: modern diag add class uml diagrams (NOAA-GFDL#1018)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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52. chore: clean up the diag registers (NOAA-GFDL#1023)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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53. style: Modifying several classes to use the "this" in type bound proc… …

    …edures. (NOAA-GFDL#1025)

    

    ngs333 authored and rem1776 committed May 1, 2024
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54. feat: update axis/subaxis types and add controller object (NOAA-GFDL#… …

    …1024)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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55. feat: Add fms_diag_time_utils.F90 (NOAA-GFDL#1041)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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56. feat: modern diag Adds zbounds to the diag_field yaml (NOAA-GFDL#1037)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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57. feat: add diag buffer object (NOAA-GFDL#1019)

    

    rem1776 authored and rem1776 committed May 1, 2024
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58. feat: modern diag_manager add io to open_file (NOAA-GFDL#1044)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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59. feat: add dump routines for diag objects (NOAA-GFDL#1048)

    

    rem1776 authored and rem1776 committed May 1, 2024
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60. chore: modern diag ifdef cleanup (NOAA-GFDL#1049)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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61. test: add failure test for compiling without yaml + skip empty tests (N… …

    …OAA-GFDL#1050)

    

    rem1776 authored and rem1776 committed May 1, 2024
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62. feat: modern diag subaxis setup (NOAA-GFDL#1056)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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63. feat: modern diag add time axis io (NOAA-GFDL#1068)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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64. feat: Add flexible timing feature in modern diag_manager (NOAA-GFDL#1077 …

    )

    

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65. feat: modern diag add diag_accept_data (NOAA-GFDL#1088)

    

    thomas-robinson authored and rem1776 committed May 1, 2024
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66. feat: modern diag Add some of the io for the field's metadata (NOAA-G… …

    …FDL#1102)

    

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67. feat: modern diag add support for unstructured grid files axis (NOAA-… …

    …GFDL#1114)

    

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68. docs: modern diag table documentation (NOAA-GFDL#1122)

    

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69. fix: modern diag race conditions and add send_data tests (NOAA-GFDL#1130 …

    )

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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70. fix: modern diag io updates for pack size and setting time to use in … …

    …filename (NOAA-GFDL#1129)

    

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71. docs: modern diag add documentation explaining the is_ocean key (NOAA… …

    …-GFDL#1133)

    

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72. feat: Modern diag_manager add diurnal axis (NOAA-GFDL#1138)

    

    uramirez8707 authored and rem1776 committed May 1, 2024
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73. feat: Modern diag manager add subzaxis (NOAA-GFDL#1148)

    

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74. fix: Adds a variable to the diag_object to store the current model ti… …

    …me + updates test (NOAA-GFDL#1150)

    

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75. style: modern diag follow the this convention for object procedures (N… …

    …OAA-GFDL#1159)

    

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76. fix: Modern diag manager check if field is registered (NOAA-GFDL#1151)

    

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77. fix: modern diag add has routine and fixes some type bound procedure … …

    …formatting (NOAA-GFDL#1182)

    

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78. fix: bounds typo and change get_buffer to reference its argument inst… …

    …ead of the module variable (NOAA-GFDL#1160)

    

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79. feat: modern diag store a variable that defines if a variable is a sc… …

    …alar (NOAA-GFDL#1175)

    

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80. fix: modern diag rename to add output to buffer names (NOAA-GFDL#1184)

    

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81. feat: update log_diag_field_info for modern diag (NOAA-GFDL#1090)

    

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82. feat: Modern diag_manager write out the cell_measures and cell_method… …

    …s attribute (NOAA-GFDL#1177)

    

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83. feat: Modern diag_manager Add a function that determine the type of t… …

    …he variable (NOAA-GFDL#1197)

    

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84. feat: Modern diag_manager add standard_name and coordinates attribute… …

    …s + minor bug fixes (NOAA-GFDL#1176)

    

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85. feat: add get_diag_field_ids to fms_diag_yaml_mod (NOAA-GFDL#1186)

    

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86. docs: update modern diag uml diagrams (NOAA-GFDL#1161)

    

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87. fix: Modern diag_manager fixes related to static and scalar fields (N… …

    …OAA-GFDL#1188)

    

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88. feat: Adds allocate_diag_field_output_buffers() to fms_diag_object_mod ( …

    NOAA-GFDL#1198)

    

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89. feat: Adds a function, check_indices_order(), to diag_util_mod (NOAA-… …

    …GFDL#1203)

    

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90. feat: modern diag add real_copy_set to diag_util_mod (NOAA-GFDL#1204)

    

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91. feat: modern diag add routine init_mask_3d() to diag_util_mod (NOAA-G… …

    …FDL#1201)

    

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92. feat: modern diag initializes buffer_ids and buffer_allocated (NOAA-G… …

    …FDL#1210)

    

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93. feat: modern diag add fms_diag_compare_window() to fmsDiagObject_type (… …

    …NOAA-GFDL#1230)

    

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94. feat: modern diag write global/variable attributes defined in the yam… …

    …l + subregional files update (NOAA-GFDL#1261)

    

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95. feat: updates function fms_diag_output_buffer_mod::remap_buffer (NOAA… …

    …-GFDL#1260)

    

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96. chore: removed mpp_io_init from test_diag_dlinked_list

    

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97. chore: Removes mpp_io from test_diag_object_container

    

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98. fix: modern diag incorrect type values and static kind sizes (NOAA-GF… …

    …DL#1263)

    

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99. feat: modern diag remove redundant fields in yaml object (NOAA-GFDL#1269 …

    )

    

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100. feat: modern diag add axis ids to the buffer object (NOAA-GFDL#1278)

     

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101. feat: modern diag adds function recondition_indices to diag_util_mod (N… …

     …OAA-GFDL#1207)

     

     ganganoaa authored and rem1776 committed May 1, 2024
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102. test: Add diag_manager testing for openmp (NOAA-GFDL#1281)

     

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103. fix: modern diag reproduce old diag_field_not_found behaviour (NOAA-G… …

     …FDL#1301)

     

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104. feat: modern diag write buffer set up (NOAA-GFDL#1311)

     

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105. feat: modern diag fix and add calls to allocate_diag_field_output_buf… …

     …fers (NOAA-GFDL#1314)

     

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106. feat: modern_diag add calls to write_data (NOAA-GFDL#1320)

     

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107. feat: modern_diag_manager add fms_diag_do_reduction (NOAA-GFDL#1321)

     

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108. fix: Modern diag manager refactor buffers (NOAA-GFDL#1332)

     

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109. fix: changes all fms2 fileobj instances to fms2io_fileobj (NOAA-GFDL#… …

     …1333)

     

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110. test: modern diag manager add reduction method tests (NOAA-GFDL#1335)

     

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111. feat: modern diag implement time_none reduction (NOAA-GFDL#1347)

     

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112. feat: modern_diag_manager update output_buffer_obj (NOAA-GFDL#1354)

     

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113. feat: modern diag change type of buffer counter (NOAA-GFDL#1315)

     

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114. feat: Modern diag manager input buffer obj (NOAA-GFDL#1362)

     

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115. feat: Modern_diag_manager add time_min/max reductions (NOAA-GFDL#1367)

     

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116. feat: changes fileobj to yaml_fileobj (NOAA-GFDL#1334)

     

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117. feat: modern diag add time_sum reduction (NOAA-GFDL#1375)

     

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118. fix: diag_send_complete loops and add get_file_ids (NOAA-GFDL#1407)

     

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119. fix: move mask from input buffer object to field object (NOAA-GFDL#1411)

     

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120. feat: Modern_diag_manager add send data 4d (NOAA-GFDL#1402)

     

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121. fix build issues

     rem1776 authored and rem1776 committed May 1, 2024
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122. fix name used for makefile conditionals in tracer and field manager t… …

     …ests

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123. fix: add missing imports from update diag code

     rem1776 authored and rem1776 committed May 1, 2024
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124. fix conditionals in test scripts

     rem1776 authored and rem1776 committed May 1, 2024
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125. feat: modern diag add time_average reduction method and test (NOAA-GF… …

     …DL#1421)

     

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126. fix: Modern_diag_manager Fix error messages + Fixes for opemp (NOAA-G… …

     …FDL#1432)

     

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127. docs: Adds the schema for the diag_table YAML (NOAA-GFDL#1441)

     

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128. chore: Removes unused diag manager update files (NOAA-GFDL#1443)

     

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129. fix: Modern Diag Manager changes for reproducibility (NOAA-GFDL#1435)

     

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130. feat: modern diag add pow and rms reductions (NOAA-GFDL#1439)

     

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131. feat: modern diag add diurnal reduction (NOAA-GFDL#1438)

     

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132. fix: remove the lowercase when saving the filename in the sorted list… …

     … of files (NOAA-GFDL#1448)

     

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133. fix: diag_manager multiple subregional diagnostics in the same file (N… …

     …OAA-GFDL#1450)

     

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134. fix: correctly adds the associated_files attribute and other reproduc… …

     …ibility fixes (NOAA-GFDL#1451)

     

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135. fix: finish diag manager reduction methods at the right time (NOAA-GF… …

     …DL#1459)

     

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136. fix: diag manager support for multiple z subaxes and for static varia… …

     …bles and files (NOAA-GFDL#1461)

     

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137. fix: move type declaration and change type for nvhpc (NOAA-GFDL#1463)

     

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138. fix: modern diag updates for the mask_variant=.true. case (NOAA-GFDL#… …

     …1464)

     

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139. feat!: modern diag manager: remove non-standard time bounds (NOAA-GFD… …

     …L#1466)
     
     * Removes the Average_* variables from the history files
     
     * remove the time_avg_info variable attribute

     

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140. Fix: Modern Diag Manager Subregional Corner Diagnostics (NOAA-GFDL#1470)

     

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141. Fix: Diag Manager Logic to add extra unlimited dimension (NOAA-GFDL#1472 …

     )

     

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142. fix: modern diag manager input buffer (NOAA-GFDL#1468)

     

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143. fix: Modern_diag_manager multiple_send_data calls option (NOAA-GFDL#1478 …

     )

     

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144. fix: diag_manager hack for when starting with 2/29 and outputting yea… …

     …rly data (NOAA-GFDL#1479)

     

     uramirez8707 authored and rem1776 committed May 1, 2024
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145. Fix: Modern diag manager. Catch missing_values without masks (NOAA-GF… …

     …DL#1481)

     

     uramirez8707 authored and rem1776 committed May 1, 2024
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146. Fix: dmUpdate nvhpc compile error (NOAA-GFDL#1473)

     

     rem1776 authored and rem1776 committed May 1, 2024
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147. docs: update diag manager readme and add markdown for yaml format (N… …

     …OAA-GFDL#1483)

     

     uramirez8707 authored and rem1776 committed May 1, 2024
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148. fix: modern_diag_manager empty files and non registered fields (NOAA-… …

     …GFDL#1482)

     

     uramirez8707 authored and rem1776 committed May 1, 2024
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149. fix: diag_manager uninitialized return value (NOAA-GFDL#1484)

     

     rem1776 authored and rem1776 committed May 1, 2024
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150. fix: modern diag fixes for gcc (NOAA-GFDL#1486)

     

     rem1776 authored and rem1776 committed May 1, 2024
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151. fix: diag manager keep track of time and unlimited dimension at the f… …

     …ile and buffer level (NOAA-GFDL#1487)

     

     uramirez8707 authored and rem1776 committed May 1, 2024
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152. feat: diag manager output yaml routine (NOAA-GFDL#1080)

     

     rem1776 authored and rem1776 committed May 1, 2024
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